View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15793_high_4 (Length: 315)

Name: NF15793_high_4
Description: NF15793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15793_high_4
NF15793_high_4
[»] chr4 (1 HSPs)
chr4 (6-312)||(42781113-42781419)
[»] chr5 (1 HSPs)
chr5 (106-180)||(35138530-35138604)
[»] chr2 (2 HSPs)
chr2 (114-224)||(41513780-41513890)
chr2 (176-213)||(39777445-39777482)
[»] chr8 (1 HSPs)
chr8 (131-220)||(11567565-11567654)
[»] chr6 (2 HSPs)
chr6 (171-224)||(34618348-34618401)
chr6 (171-224)||(34745785-34745838)
[»] chr1 (2 HSPs)
chr1 (31-67)||(5085967-5086003)
chr1 (99-143)||(46874566-46874610)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 6 - 312
Target Start/End: Original strand, 42781113 - 42781419
Alignment:
Q  6 aaaacatctatcaaaattcaaaaccaatgaaagacctgcatattgacttgaacattctcttgcaaacataaaacttttagcaacattctggtgaatttga 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||    
T  42781113 aaaacatccatcaaaattcaaaaccaatgaaagacctgcatattgacttgaatagtctcttgcaaacataaaacttttagtaacattctggtgaatttga 42781212  T
Q  106 aaaatgaataaattgactaacattgttcaatttaagggactgaaatgatattttgccaatttgaagaactaaatttactgactcttacaatttctatgac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42781213 aaaatgaataaattgactaacattgttcaatttaagggactgaaatgatattttgccaatttgaagaactaaatttactgactctaacaatttctatgac 42781312  T
Q  206 gaaaatgctgatttactcctaatagaactaaatgacatttattttcacgatggcagttcatcatcctgtccacctgtaaatgatccaaaagaacagattc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42781313 gaaaatgctgatttactcctaatagaactaaatgacatttattttcacgatggcagttcatcatcctgtccacctgtaaatgatccaaaagaacagattc 42781412  T
Q  306 cgttcat 312  Q
    |||||||    
T  42781413 cgttcat 42781419  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 35138530 - 35138604
Alignment:
Q  106 aaaatgaataaattgactaacattgttcaatttaagggactgaaatgatattttgccaatttgaagaactaaatt 180  Q
    |||||||  |||||||||||||||||||||||||||||||| || || ||||| || ||||||||  ||||||||    
T  35138530 aaaatgacgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaatt 35138604  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 41513890 - 41513780
Alignment:
Q  114 taaattgactaacattgttcaatttaagggactgaaatgatattttgccaatttgaagaactaaatttactgactcttacaatttctatgacgaaaatgc 213  Q
    |||||||| | | ||| |||||||||||||||| |  || |||||||| ||||||||| ||||||||  ||||| ||| ||| |||  |||| |||||||    
T  41513890 taaattgattgatatttttcaatttaagggactaacttgctattttgcaaatttgaaggactaaattggctgacccttgcaaattcagtgactaaaatgc 41513791  T
Q  214 tgatttactcc 224  Q
      |||||||||    
T  41513790 ctatttactcc 41513780  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 39777482 - 39777445
Alignment:
Q  176 aaatttactgactcttacaatttctatgacgaaaatgc 213  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  39777482 aaatttactgactcttacaatttccatgactaaaatgc 39777445  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 11567654 - 11567565
Alignment:
Q  131 ttcaatttaagggactgaaatgatattttgccaatttgaagaactaaatttactgactcttacaatttctatgacgaaaatgctgattta 220  Q
    |||||||||||||| |||| |   ||||||  ||||||| | |||||||| || ||| ||||||||||| | ||| ||||||||||||||    
T  11567654 ttcaatttaagggaatgaattaccattttgtaaatttgagggactaaattgaccgacccttacaatttcaaggactaaaatgctgattta 11567565  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 34618348 - 34618401
Alignment:
Q  171 gaactaaatttactgactcttacaatttctatgacgaaaatgctgatttactcc 224  Q
    ||||||||||   |||||||||||||||| | ||| ||||||||||||||||||    
T  34618348 gaactaaattgcttgactcttacaatttcaaggaccaaaatgctgatttactcc 34618401  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 34745785 - 34745838
Alignment:
Q  171 gaactaaatttactgactcttacaatttctatgacgaaaatgctgatttactcc 224  Q
    ||||||||||   |||||||||||||||| | ||| ||||||||||||||||||    
T  34745785 gaactaaattgcttgactcttacaatttcaaggaccaaaatgctgatttactcc 34745838  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 5086003 - 5085967
Alignment:
Q  31 aatgaaagacctgcatattgacttgaacattctcttg 67  Q
    ||||||||||||||||||||||||||| | |||||||    
T  5086003 aatgaaagacctgcatattgacttgaatagtctcttg 5085967  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 46874610 - 46874566
Alignment:
Q  99 aatttgaaaaatgaataaattgactaacattgttcaatttaaggg 143  Q
    |||||||||||||| |||||||||| |  ||||||||||||||||    
T  46874610 aatttgaaaaatgactaaattgacttaagttgttcaatttaaggg 46874566  T

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