View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15793_low_1 (Length: 612)
Name: NF15793_low_1
Description: NF15793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15793_low_1 |
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| [»] scaffold0856 (3 HSPs) |
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Alignment Details
Target: scaffold0856 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 319 - 598
Target Start/End: Complemental strand, 3497 - 3218
Alignment:
| Q |
319 |
agcaaatagcatttatatgattaatccagccttcagttttttctatcttgtagaatatattactcctttagttgcccttgaaatgggaagtccgttagtg |
418 |
Q |
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| T |
3497 |
agcaaatagcatttatatgattaatccagccttcagttttttctatcttgtagaatatattactcctttagttgcccttgaaatgggaagtccgttagtg |
3398 |
T |
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| Q |
419 |
agtggacttaggaacctcttcattgagtatattatcatatttgaaattgaaagatcccttcttatgaaacaaagtgaaatggagtaagatggtcccagaa |
518 |
Q |
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| T |
3397 |
agtggacttaggaacctcttcattgagtatattatcatatttgaaattgaaagatcccttcttatgaaacaaagtgcaatggagtaagatggtcccagaa |
3298 |
T |
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| Q |
519 |
tcaagttagctgagtcactaccacaacatgttctattttggctaatgtgtcaatgttagcgcagtttctttctacaatgt |
598 |
Q |
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| T |
3297 |
taaagttagctgagtcactaccaaaacaagttctattttggctaatgtgtcaatgttagcgcagtttctttctacaatgt |
3218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 59 - 278
Target Start/End: Complemental strand, 3710 - 3491
Alignment:
| Q |
59 |
caaccacgaagtttagtcagctaaggaacaagctaggagtagtcaaaccatcctctagcttgagaggggcagttaaggaatgatcatagccagtttgaaa |
158 |
Q |
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| T |
3710 |
caaccatgaagtttagtcagctaaggaacaagctaggagtagtcaaaccatcctctagcttgagaggggcagttaaggaatgatcatagccagtttgaaa |
3611 |
T |
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| Q |
159 |
ttgtctccgaccgatagcatgatatcttgatttaaatttgtagattttctaaatctcttatctttcatctgtaattcggaattgtgttatcttatcctaa |
258 |
Q |
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| T |
3610 |
ttgtctccgaccgatagcatgatatcttgatttaaatttgtagattttctaaatctcttatctttcatctgtaattcggaattgtgttatcttatcctaa |
3511 |
T |
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| Q |
259 |
ttattctgtctgtaacaaat |
278 |
Q |
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| T |
3510 |
ttattctgtctgtagcaaat |
3491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 3796 - 3748
Alignment:
| Q |
15 |
cagagatcagttgttgagtaataacgtgactatagcctatggtccaacc |
63 |
Q |
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| T |
3796 |
cagagatcagttgttgagtaataacgcgactatagcctatggtccaacc |
3748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 593
Target Start/End: Complemental strand, 30275394 - 30275265
Alignment:
| Q |
465 |
ttgaaagatccctt-cttatgaaacaaagtgaaatggagtaagatggtcccagaatcaagttagctgagtcactaccacaacatg-ttctattttggcta |
562 |
Q |
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|||||||| ||||| |||||||||||| ||| || |||| ||||| || | |||||||||||| |||||||||| ||||||| | |||||||||||| | |
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| T |
30275394 |
ttgaaagagcccttacttatgaaacaa-gtgcaacggagcaagatagttctagaatcaagttacctgagtcacttacacaacaggtttctattttggcca |
30275296 |
T |
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| Q |
563 |
atgtgtcaatgttagcgcagtttctttctac |
593 |
Q |
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| T |
30275295 |
atttgtcaacattggtgcagtttctctctac |
30275265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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