View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15793_low_3 (Length: 415)
Name: NF15793_low_3
Description: NF15793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15793_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 29132286 - 29131885
Alignment:
| Q |
1 |
agtggacttactttcatcattgtacctgatgaattcactgttggaaggccaggaccttggcttggtatgcttaatgatgcttgcgagagcgattataaag |
100 |
Q |
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| T |
29132286 |
agtggacttactttcatcattgtacctgatgaattcactgttggaaggccaggaccttggcttggtatgcttaatgatgcttgcgagagcgattataaag |
29132187 |
T |
|
| Q |
101 |
ctgttgcaattgagtttgatacacgagaaaatccagaattcggtgatccaaatgataaccatgttggtataaatttaggtagcatagtatctactaaaat |
200 |
Q |
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| T |
29132186 |
ccgttgcaattgagtttgatacacgagaaaatccagaattcggtgatccaaatgataaccatgttggtataaatttaggtagcatagtatctactaaaat |
29132087 |
T |
|
| Q |
201 |
tatcaatgtttcagatattggagtttctcttaaggatggttttgttcaccatgcttggattgattatgatggtcctcgaagacgaattgacattcgttta |
300 |
Q |
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| T |
29132086 |
tatcaatgtttcagatattggagtttctcttaaggatggttttgttcaccatgcttggattgattatgatggtcctcaaagacgaattgacattcgttta |
29131987 |
T |
|
| Q |
301 |
ggacttgctaatcaagatgtttatcctactaagcctattttctcggagtttatggatctgtcaccttatctgaatgagtatatgtttgtaggattctctg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29131986 |
ggacttgctaatcaagatgtttatcctactaagcctattttctcggagtttatggatctttcaccttatctgaatgagtatatgtttgtaggattctctg |
29131887 |
T |
|
| Q |
401 |
ct |
402 |
Q |
| |
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|| |
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| T |
29131886 |
ct |
29131885 |
T |
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