View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15794_high_1 (Length: 611)
Name: NF15794_high_1
Description: NF15794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15794_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 24 - 598
Target Start/End: Complemental strand, 1209771 - 1209198
Alignment:
| Q |
24 |
cctaaaagttattatgtttagctaaaatgaattttgacaattatttatgatagagtcatattcaatttaaatatatgaaatttgacgttgtgaccatctt |
123 |
Q |
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| T |
1209771 |
cctaaaagttattatgtttagctaaaatgaattttgacaattatttatgatagagtcatattcaaattaaatatatgaaatttgacgttgtgaccatctt |
1209672 |
T |
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| Q |
124 |
cacctactcattaacaatcaaattcaaatataatattatgtagacttgagactattatacattgaagtgtttgatacaaactccaagccacgacaaaaca |
223 |
Q |
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| T |
1209671 |
cacctactcattaacaatcagattcaaatataacattacgtagatttgagactattatacattgaagtgtttgatataaactccaagccacgacaaaaca |
1209572 |
T |
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| Q |
224 |
acattgatcttgtgtcactcaacattatatttgaatgagcctaagggaagatgctcccaaaaaatatcaaaggaagcggttaaacctaatttgagtttat |
323 |
Q |
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| T |
1209571 |
acattgatcttgtgtcactcaacattatatatgaatgagcccaaagcaagatgctcccaaaaaatatcaaaggaagcggttaaacctaatttgagtttat |
1209472 |
T |
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| Q |
324 |
tttatgtgttaacctttgatttttagaaaaggagatttcgataatccgaagtttcatcaagggagataagtaaattatagttaagaattgttccaccaaa |
423 |
Q |
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| T |
1209471 |
tttatgtgttaacctttgatttttaagaaaggagattttgataatcagaagtttcatca--gaagataagtaaattatagttaaaaattattccaccaaa |
1209374 |
T |
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| Q |
424 |
aacctaatttgaatcttattacttttgtgagcatttacttgccaagaagtgtttagcaaagtccatcatgttcattttatttttgagagttctca-nnnn |
522 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1209373 |
aacctaatttgagtcttattacttttgtgagcatttacttgccaagaagtgtttagcaaagtccatcatgttcattttatttttgagagttctcattttt |
1209274 |
T |
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| Q |
523 |
nnncctcttgagaggaagttcatgttctcatgagtcttatttcttaattagtatatttagcaagtgttacatagta |
598 |
Q |
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| T |
1209273 |
tttcctcttgagaggaagtccatgttctcatgagtcttatttcttaattagtatatttagcaagtgttacatagta |
1209198 |
T |
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