View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15794_low_2 (Length: 362)
Name: NF15794_low_2
Description: NF15794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15794_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 3015519 - 3015182
Alignment:
| Q |
18 |
catgtgcaacatgactctctatgttattcaattgttgtccttgtgactcaacaagtgctgccatgtccaaaaatacttgatgcaactcaatcaagttttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015519 |
catgtgcaacatgactctctatgttattcaattgttgtccttgtgactcaacaagtgctgccatgtccaaaaatacttgatgcaactcaatcaagttttt |
3015420 |
T |
|
| Q |
118 |
ctctatttccttaacagcatcatgtctttcttgaatctcagatattgtgtccataatctgacccctaccttgttcttgaattgctctttgcataaaagtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015419 |
ctctatttccttaacagcatcatgtctttcttgaatctcagatattgtgtccataatctgacccctaccttgttcttgaattgctctttgcataaaagtt |
3015320 |
T |
|
| Q |
218 |
tcactttctccacttgatatcaaattctcaatagtatcttcatcagctttctcaccagttattgtaaaataccttctttcaattgtttccttgtactctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015319 |
tcactttctccacttgatatcaaattctcaatagtatcttcatcagctttctcaccagttattgtaaaataccttctttcaattgtttccttgtactctt |
3015220 |
T |
|
| Q |
318 |
gttgcattcttgctcttaacccttgaaaatcattcatc |
355 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
3015219 |
gttgcattcttgctcttaacccttgaaaatcatccatc |
3015182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 35955618 - 35955955
Alignment:
| Q |
18 |
catgtgcaacatgactctctatgttattcaattgttgtccttgtgactcaacaagtgctgccatgtccaaaaatacttgatgcaactcaatcaagttttt |
117 |
Q |
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||||||||||||| ||||| || ||||| | |||||||||||| ||||| || | | |||||| |||||||| |||||||||||||||||||| || || |
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| T |
35955618 |
catgtgcaacatggctctcaatattattaagttgttgtccttgagactctaccaaagttgccatatccaaaaacacttgatgcaactcaatcaaattctt |
35955717 |
T |
|
| Q |
118 |
ctctatttccttaacagcatcatgtctttcttgaatctcagatattgtgtccataatctgacccctaccttgttcttgaattgctctttgcataaaagtt |
217 |
Q |
| |
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||| |||||||||||||||||||||||||||||||| || || || || ||||| || |||||||||||||||||||||||||| |||||||| ||| || |
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| T |
35955718 |
ctcaatttccttaacagcatcatgtctttcttgaatttccgaaatagtatccattatttgacccctaccttgttcttgaattgccctttgcatgaaattt |
35955817 |
T |
|
| Q |
218 |
tcactttctccacttgatatcaaattctcaatagtatcttcatcagctttctcaccagttattgtaaaataccttctttcaattgtttccttgtactctt |
317 |
Q |
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|||||||||||||||||||||||||| || ||||| |||||||| |||||||| || ||||||||||||||||| | ||| | |||||||| ||||| |
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| T |
35955818 |
tcactttctccacttgatatcaaattttctatagtttcttcatccgctttctctcccgttattgtaaaatacctccgttccaccgtttccttatactcaa |
35955917 |
T |
|
| Q |
318 |
gttgcattcttgctcttaacccttgaaaatcattcatc |
355 |
Q |
| |
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|||||||||||||||| || ||||||||||||| |||| |
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| T |
35955918 |
gttgcattcttgctctcaaaccttgaaaatcatccatc |
35955955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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