View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15794_low_4 (Length: 253)

Name: NF15794_low_4
Description: NF15794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15794_low_4
NF15794_low_4
[»] scaffold0433 (1 HSPs)
scaffold0433 (17-246)||(8084-8313)
[»] chr6 (14 HSPs)
chr6 (17-246)||(17690442-17690671)
chr6 (17-246)||(27297635-27297864)
chr6 (17-246)||(29309866-29310095)
chr6 (17-246)||(29316825-29317054)
chr6 (17-246)||(27380229-27380458)
chr6 (17-246)||(27470612-27470841)
chr6 (17-246)||(17683459-17683689)
chr6 (17-246)||(11652674-11652903)
chr6 (81-246)||(27278407-27278572)
chr6 (81-246)||(27303298-27303463)
chr6 (17-120)||(25536292-25536395)
chr6 (57-246)||(18336605-18336794)
chr6 (116-221)||(28755282-28755386)
chr6 (189-221)||(16393506-16393538)
[»] chr1 (10 HSPs)
chr1 (17-246)||(18253006-18253235)
chr1 (17-242)||(18531519-18531745)
chr1 (17-246)||(27309555-27309783)
chr1 (17-246)||(9075879-9076108)
chr1 (17-246)||(16358035-16358266)
chr1 (17-190)||(27130442-27130615)
chr1 (157-246)||(21169411-21169500)
chr1 (85-243)||(22640856-22641014)
chr1 (17-98)||(36815747-36815828)
chr1 (61-94)||(27276691-27276724)
[»] scaffold0061 (1 HSPs)
scaffold0061 (17-246)||(5198-5427)
[»] scaffold0390 (2 HSPs)
scaffold0390 (17-246)||(5911-6140)
scaffold0390 (17-246)||(12927-13156)
[»] chr4 (25 HSPs)
chr4 (17-246)||(8859168-8859397)
chr4 (17-248)||(18263188-18263419)
chr4 (17-248)||(18270049-18270280)
chr4 (17-246)||(26971441-26971670)
chr4 (17-246)||(869597-869826)
chr4 (17-246)||(19919508-19919737)
chr4 (17-246)||(19925737-19925966)
chr4 (17-246)||(28392144-28392373)
chr4 (17-246)||(55613685-55613913)
chr4 (17-246)||(5714948-5715178)
chr4 (17-234)||(4425629-4425846)
chr4 (17-246)||(5708313-5708542)
chr4 (17-246)||(10620310-10620539)
chr4 (17-246)||(10627392-10627621)
chr4 (60-246)||(26964590-26964776)
chr4 (17-246)||(47387932-47388161)
chr4 (17-120)||(8846179-8846282)
chr4 (17-118)||(5667198-5667299)
chr4 (91-221)||(35224602-35224732)
chr4 (115-242)||(10676570-10676697)
chr4 (115-242)||(10890210-10890337)
chr4 (172-242)||(20579418-20579488)
chr4 (184-246)||(10825329-10825391)
chr4 (115-170)||(10690368-10690423)
chr4 (115-170)||(10904008-10904063)
[»] scaffold0234 (2 HSPs)
scaffold0234 (17-248)||(1319-1550)
scaffold0234 (17-248)||(10212-10443)
[»] chr8 (9 HSPs)
chr8 (17-246)||(22172461-22172690)
chr8 (17-246)||(6095122-6095351)
chr8 (17-246)||(21941641-21941872)
chr8 (17-246)||(15327199-15327428)
chr8 (17-246)||(15507568-15507797)
chr8 (17-196)||(28549023-28549203)
chr8 (93-246)||(24644001-24644153)
chr8 (57-196)||(29230430-29230568)
chr8 (60-196)||(24796039-24796170)
[»] chr7 (13 HSPs)
chr7 (17-246)||(29328764-29328993)
chr7 (17-246)||(11535064-11535293)
chr7 (17-246)||(11541982-11542211)
chr7 (17-246)||(12739518-12739747)
chr7 (17-246)||(12751835-12752064)
chr7 (17-246)||(15153444-15153672)
chr7 (17-246)||(18562009-18562238)
chr7 (46-246)||(2652990-2653190)
chr7 (50-246)||(9978837-9979033)
chr7 (17-129)||(11557192-11557298)
chr7 (17-88)||(24850719-24850790)
chr7 (17-96)||(13393138-13393217)
chr7 (169-223)||(18256843-18256897)
[»] chr3 (25 HSPs)
chr3 (17-246)||(10571568-10571797)
chr3 (17-246)||(10578334-10578563)
chr3 (17-246)||(15341221-15341450)
chr3 (17-246)||(15356588-15356817)
chr3 (17-246)||(15599886-15600115)
chr3 (17-246)||(15606431-15606660)
chr3 (17-246)||(16481460-16481688)
chr3 (46-246)||(6111105-6111305)
chr3 (17-245)||(13517785-13518013)
chr3 (17-248)||(17196748-17196979)
chr3 (17-246)||(18537971-18538200)
chr3 (17-234)||(32056059-32056276)
chr3 (17-246)||(1646498-1646727)
chr3 (72-246)||(13212331-13212505)
chr3 (85-246)||(8491428-8491589)
chr3 (17-167)||(17137355-17137505)
chr3 (17-243)||(23014348-23014574)
chr3 (17-242)||(16201195-16201420)
chr3 (17-123)||(17780243-17780349)
chr3 (17-123)||(19081544-19081650)
chr3 (157-242)||(13258661-13258746)
chr3 (165-246)||(17780165-17780246)
chr3 (165-246)||(19081466-19081547)
chr3 (58-240)||(25801214-25801392)
chr3 (152-216)||(54333200-54333264)
[»] chr2 (5 HSPs)
chr2 (17-246)||(22790835-22791064)
chr2 (23-246)||(41664747-41664970)
chr2 (17-116)||(21329374-21329473)
chr2 (17-193)||(18620811-18620988)
chr2 (116-221)||(27353433-27353538)
[»] chr5 (7 HSPs)
chr5 (17-246)||(24694462-24694689)
chr5 (17-234)||(19713514-19713731)
chr5 (17-246)||(24701231-24701453)
chr5 (28-246)||(18565459-18565681)
chr5 (17-190)||(19706230-19706403)
chr5 (57-221)||(938577-938740)
chr5 (165-244)||(39539653-39539732)
[»] scaffold0220 (1 HSPs)
scaffold0220 (17-234)||(19288-19506)
[»] scaffold1199 (1 HSPs)
scaffold1199 (17-246)||(96-330)
[»] scaffold0063 (1 HSPs)
scaffold0063 (17-246)||(6498-6733)
[»] scaffold0008 (1 HSPs)
scaffold0008 (17-246)||(229389-229622)
[»] scaffold0213 (1 HSPs)
scaffold0213 (114-246)||(4313-4445)
[»] scaffold1303 (1 HSPs)
scaffold1303 (99-243)||(986-1129)
[»] scaffold0026 (1 HSPs)
scaffold0026 (104-246)||(26276-26418)
[»] scaffold0032 (1 HSPs)
scaffold0032 (17-246)||(107249-107479)
[»] scaffold0203 (1 HSPs)
scaffold0203 (130-246)||(29186-29302)
[»] scaffold0502 (1 HSPs)
scaffold0502 (57-242)||(62-247)
[»] scaffold0657 (1 HSPs)
scaffold0657 (194-246)||(3870-3922)
[»] scaffold0039 (1 HSPs)
scaffold0039 (158-246)||(87829-87916)


Alignment Details
Target: scaffold0433 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 8084 - 8313
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8084 aaatagaacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgtt 8183  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8184 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 8283  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  8284 agaaatatttcttctacaaaggttctgctc 8313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 17690671 - 17690442
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  17690671 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 17690572  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17690571 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 17690472  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  17690471 agaaatatttcttctacaaaggttctgctc 17690442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 27297635 - 27297864
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27297635 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgtt 27297734  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27297735 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatt 27297834  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  27297835 agaaatatttcttctacaaaggttctgctc 27297864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 29309866 - 29310095
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  29309866 aaatagaacccttgtgttgaagcattactaacttttggtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 29309965  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
     ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29309966 atctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatagctgctttgctttgctcgtgatc 29310065  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  29310066 agaaatatttcttctacaaaggttctgctc 29310095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 29316825 - 29317054
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  29316825 aaatagaacccttgtgttgaagcattactaacttttggtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 29316924  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
     |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29316925 atctctgaatctctgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatagctgctttgctttgctcgtgatc 29317024  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  29317025 agaaatatttcttctacaaaggttctgctc 29317054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 27380458 - 27380229
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  27380458 aaatagaacccttgtgttgaaacattattaacctttggtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 27380359  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27380358 ctctctgaatctccgttggaattggctagcaccggtcatcagagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 27380259  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  27380258 agaaatatttcttctacaaaggttctgctc 27380229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 27470841 - 27470612
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  27470841 aaatagaacccttgtgttgaaacattattaacctttggtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 27470742  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27470741 ctctctgaatctccgttggaattggctagcaccggtcatcagagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 27470642  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  27470641 agaaatatttcttctacaaaggttctgctc 27470612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 17683689 - 17683459
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaac-tttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgt 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||| | ||||||||||||| ||||    
T  17683689 aaatagaacccttgtgttgaagcattactaacctttttgtgagtgcttaacttaattcacaaaagttgtgaaaccctagtcaccgctctctaaacattgt 17683590  T
Q  116 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 215  Q
    ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17683589 tctctttgaatctccgttggaattggctagcaccggtcatcagagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 17683490  T
Q  216 cagaaatatttcttctacacaggttctgctc 246  Q
    ||||||||||||| ||||| |||||||||||    
T  17683489 cagaaatatttctgctacaaaggttctgctc 17683459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 11652674 - 11652903
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| ||||  |||||||||||||| || ||    
T  11652674 aaatagaacccttgtgttgaagcattactaattttttgtgaatgctgaacctaattcacaaaagttgtgaaaccctagatgccgctctctaaaccttctt 11652773  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    || ||||||||| ||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  11652774 ctttctgaatctccgttggaattggctagcaccggtcatcagagaagtacagtttgtgtggactgagtagaggcatcgctgctttgctttactcgtgatc 11652873  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  11652874 agaaatatttcttctacaaaggttctgctc 11652903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 81 - 246
Target Start/End: Original strand, 27278407 - 27278572
Alignment:
Q  81 ttgtgaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggact 180  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27278407 ttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggact 27278506  T
Q  181 gagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  27278507 gagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctacaaaggttctgctc 27278572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 81 - 246
Target Start/End: Original strand, 27303298 - 27303463
Alignment:
Q  81 ttgtgaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggact 180  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27303298 ttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggact 27303397  T
Q  181 gagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  27303398 gagtagaggcatcgctgctttgctttgctcgtgattagaaatatttcttctacaaaggttctgctc 27303463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 25536395 - 25536292
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||    
T  25536395 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacccaagccgccgctctctaaaccttgtt 25536296  T
Q  117 ctct 120  Q
    ||||    
T  25536295 ctct 25536292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 57 - 246
Target Start/End: Original strand, 18336605 - 18336794
Alignment:
Q  57 agtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatc 156  Q
    ||||||| |||||||||| |||||| |||||||  || | |||||||||||||| |||||||||||| |||| ||||| | |||||||||||| |||||     
T  18336605 agtgctttacctaattcataaaagtggtgaaacaatatctgccgctctctaaaccttgttctctctggatctccgttgaagttggctagcaccagtcatt 18336704  T
Q  157 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
     |||||||| |||||||||||||||||||||| |||||||   |||||||||| ||||||||||| |||| | ||||| |||||||||||    
T  18336705 agagaagttatgttcgtgtggactgagtagagacatcgctatgttgctttgcttgtgatcagaaacatttatgctacaaaggttctgctc 18336794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 28755386 - 28755282
Alignment:
Q  116 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 215  Q
    ||||||| || |||||||||||||||||||||||| ||||  || ||||||| |||||||||||||||||||| ||| ||| ||||| ||||||||||||    
T  28755386 tctctctcaaccttcgttggaattggctagcaccgatcattaga-aagttctattcgtgtggactgagtagagacattgctactttgatttgctcgtgat 28755288  T
Q  216 cagaaa 221  Q
    ||||||    
T  28755287 cagaaa 28755282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 16393538 - 16393506
Alignment:
Q  189 gcatcgctgctttgctttgctcgtgatcagaaa 221  Q
    |||||||| ||||||||||||||||||||||||    
T  16393538 gcatcgctactttgctttgctcgtgatcagaaa 16393506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 18253006 - 18253235
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  18253006 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 18253105  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18253106 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 18253205  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  18253206 agaaatatttcttctacaaaggttctgctc 18253235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 18531745 - 18531519
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaac-tttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgt 115  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |    
T  18531745 aaatagaacccttgtgttgaagcattacgaacctttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttct 18531646  T
Q  116 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18531645 tctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctgctttgctttgctcgtgat 18531546  T
Q  216 cagaaatatttcttctacacaggttct 242  Q
    ||||||||||||||||||| |||||||    
T  18531545 cagaaatatttcttctacaaaggttct 18531519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 27309783 - 27309555
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||    
T  27309783 aaatagaacc-ttgtgttgaagcattactaactttttgtgagtgcttaacctaattaacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 27309685  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  27309684 ctctttgaatctccgttgaaattggctagcaccggtcatcggagaggttcttttcgtgtggactgagtagaggcatcgctactttgctttgctcgtgatc 27309585  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| ||||| |||||    
T  27309584 agaaatatttcttctacaaaggttttgctc 27309555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 9076108 - 9075879
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||    
T  9076108 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacctcgtt 9076009  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||| ||||||| ||||||||||||||||||||| |||| ||||| ||||||||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  9076008 ctctttgaatctccgttggaattggctagcaccgatcataggagacgttctgttcatgtggaatgagtagaggcaacgctgctttgctttgctcgtgatc 9075909  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||||| |||||||||| || ||||||||    
T  9075908 agaaataattcttctacaaagattctgctc 9075879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 16358266 - 16358035
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | |||||||||||| |||||    
T  16358266 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccatagctgtcgctctctaaacgttgtt 16358167  T
Q  117 ctctctgaatcttcgttggaattgg-ctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgc-tcgtga 214  Q
    |||| ||||||  |||||||||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||    
T  16358166 ctctttgaatccccgttggaattggtctatcaccggtcttcggagaagttctgttcttgtggactgagtagaggcatcgctgcttttcttttcttcgtga 16358067  T
Q  215 tcagaaatatttcttctacacaggttctgctc 246  Q
    ||| |||||||||||||||| |||||||||||    
T  16358066 tcataaatatttcttctacaaaggttctgctc 16358035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 27130615 - 27130442
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||    
T  27130615 aaatagaacccttgtgttgaagcattactaactttttgtaagtgcttaacctaattcacaaaagttgtgaaaccctagcctccgctctctaaaccttgtt 27130516  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggc 190  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27130515 ctctctgaatctccgttggaattggctagcaccggtcttcggagaagttctgttcgtgtggactgagtagaggc 27130442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 21169500 - 21169411
Alignment:
Q  157 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21169500 ggagaagttctgttcgtgtggactgagtagaggcatcgttgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 21169411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 85 - 243
Target Start/End: Complemental strand, 22641014 - 22640856
Alignment:
Q  85 gaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagt 184  Q
    ||||| ||||||||||||||| ||||    ||||||||||||||  ||||||||||||||||||  |||||  |||||||||||  ||| ||||| ||||    
T  22641014 gaaaccctagccgccgctctcaaaaccccattctctctgaatctctgttggaattggctagcactagtcataagagaagttctgaacgtctggacagagt 22640915  T
Q  185 agaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctg 243  Q
    |||||||||||| | |||||||||||||||||||||| | |||| ||||| ||||||||    
T  22640914 agaggcatcgctacgttgctttgctcgtgatcagaaacaattctgctacaaaggttctg 22640856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 36815828 - 36815747
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgc 98  Q
    ||||||||||||||||||||||||| ||  |||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  36815828 aaatagaacccttgtgttgaagcatgacagacttcttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgc 36815747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 27276724 - 27276691
Alignment:
Q  61 cttaacctaattcacaaaagttgtgaaacgctag 94  Q
    ||||||||||||||||||||||||||||| ||||    
T  27276724 cttaacctaattcacaaaagttgtgaaaccctag 27276691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 5427 - 5198
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  5427 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 5328  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5327 ctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 5228  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  5227 agaaatatttcttctacaaaggttctgctc 5198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 6140 - 5911
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  6140 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 6041  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6040 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 5941  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  5940 agaaagatttctgctacaaaggttctgctc 5911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 13156 - 12927
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||    
T  13156 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaacagttgtgaaaccctagccgccgctctctaaaccttgtt 13057  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13056 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatg 12957  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  12956 agaaagatttctgctacaaaggttctgctc 12927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 8859168 - 8859397
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  8859168 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 8859267  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8859268 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 8859367  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  8859368 agaaagatttctgctacaaaggttctgctc 8859397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 18263188 - 18263419
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  18263188 aaatagaacccttgtgttgaaacatgactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 18263287  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18263288 ctctctgaatctccgttggaattggctagcaccggtcatcggataagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 18263387  T
Q  217 agaaatatttcttctacacaggttctgctcgt 248  Q
    |||||||||||||||||| |||||||||||||    
T  18263388 agaaatatttcttctacaaaggttctgctcgt 18263419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 18270049 - 18270280
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  18270049 aaatagaacccttgtgttgaaacatgactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 18270148  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18270149 ctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 18270248  T
Q  217 agaaatatttcttctacacaggttctgctcgt 248  Q
    |||||||||||||||| | |||||||||||||    
T  18270249 agaaatatttcttctataaaggttctgctcgt 18270280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 26971441 - 26971670
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  26971441 aaatagaacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 26971540  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26971541 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 26971640  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||| | ||||| |||||||||||    
T  26971641 agaaagatttatgctacaaaggttctgctc 26971670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 869597 - 869826
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||    
T  869597 aaatagaacccttgtgttgaaacattactaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacatagtt 869696  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  869697 ctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 869796  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| | |||||||||    
T  869797 agaaatatttcttctacaaatgttctgctc 869826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 19919737 - 19919508
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||    
T  19919737 aaatagaacccttgtgttgaagcattactacctttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttctt 19919638  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19919637 ctctctgaatctccgttgaaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 19919538  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| ||||| |||||    
T  19919537 agaaatatttcttctacaaaggttgtgctc 19919508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 19925966 - 19925737
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||    
T  19925966 aaatagaacccttgtgttgaagcattactacctttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttctt 19925867  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19925866 ctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcattgctgctttgctttgctcgtgatc 19925767  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| ||||| |||||    
T  19925766 agaaatatttcttctacaaaggttgtgctc 19925737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 28392373 - 28392144
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || ||    
T  28392373 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagctgccgctctttaaaccttctt 28392274  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28392273 ctctctgaatctccgttggaattggctagcaccagtcatcggagaagtactgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 28392174  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  28392173 agaaatatttcttctacaaaggttctgctc 28392144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 55613685 - 55613913
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||    
T  55613685 aaatagaacccttgtgttgaagcattacttactttttgtgagtgcttaacctaattcacaaaagttgtgaaactc-agccgccgctctctaaaccttgtt 55613783  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55613784 ctctctgaatcttcgttggaattggctagcaccagtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 55613883  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  55613884 agaaagatttctgctacaaaggttctgctc 55613913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 5714948 - 5715178
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgt-gagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgt 115  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||    
T  5714948 aaatagaacccttgtgttgaaacattactaaccttttgttgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacgtagt 5715047  T
Q  116 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 215  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5715048 tctctctgaatctccgttggaattggctagcactggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 5715147  T
Q  216 cagaaatatttcttctacacaggttctgctc 246  Q
    ||||||||||||||||||| |||||||||||    
T  5715148 cagaaatatttcttctacaaaggttctgctc 5715178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 4425846 - 4425629
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  4425846 aaatagaacccttgtgttgaagcattactaactttttgtaagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 4425747  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  4425746 ctctttgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctgctttgctttgctcgtgatt 4425647  T
Q  217 agaaatatttcttctaca 234  Q
    ||||||||||||||||||    
T  4425646 agaaatatttcttctaca 4425629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 5708313 - 5708542
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |||    
T  5708313 aaatagaacccttgtgttgaaacattactaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgctgctctctaaacgtagtt 5708412  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5708413 ctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 5708512  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||||||||||| |||| || ||||||||    
T  5708513 agaaatatttcttatacaaagattctgctc 5708542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 10620539 - 10620310
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| |||||    
T  10620539 aaatagaacccttgtgttgaagcattactgactttttgtgagtgcttgacctaattcacaaaagttgtgaaaccctagccgtcgctctctaaaccttgtt 10620440  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10620439 ctctctgaatctctgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgaatagaggcatcgctgctttgctttgctcgtgatc 10620340  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  10620339 agaaagatttctgctacagaggttctgctc 10620310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 10627621 - 10627392
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| |||||    
T  10627621 aaatagaacccttgtgttgaagcattactgactttttgtgagtgcttgacctaattcacaaaagttgtgaaaccctagccgtcgctctctaaaccttgtt 10627522  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10627521 ctctctgaatctccattggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgaatagaggcatcgctgctttgctttgctcgtgatc 10627422  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  10627421 agaaagatttctgctacagaggttctgctc 10627392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 60 - 246
Target Start/End: Original strand, 26964590 - 26964776
Alignment:
Q  60 gcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcgga 159  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26964590 gcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcgga 26964689  T
Q  160 gaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |||||||||||    
T  26964690 gaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttatgctacaaaggttctgctc 26964776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 47388161 - 47387932
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||| ||||| |||| ||||||| ||||||  ||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||| || ||    
T  47388161 aaatagaaccattgtgctgaaacattactgacttttgttgagtgcttaacctaattcacaaaaggcgtgaaaccctagccgccactctctaaaccttttt 47388062  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||    
T  47388061 ctcactgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctatgttgctttgctcgtgatc 47387962  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| | || | ||||| |||||||||||    
T  47387961 agaaacaattatgctacaaaggttctgctc 47387932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 8846179 - 8846282
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8846179 aaatagaacccttgtattgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgtt 8846278  T
Q  117 ctct 120  Q
    ||||    
T  8846279 ctct 8846282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 5667299 - 5667198
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||||||||| |||||||||||  | |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||    
T  5667299 aaatagaacccttgtgctgaagcattacatattttttgtgagtgcttaaccttattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 5667200  T
Q  117 ct 118  Q
    ||    
T  5667199 ct 5667198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 35224602 - 35224732
Alignment:
Q  91 ctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggc 190  Q
    ||||||||| ||||||||||  | |||| ||||||| | ||||||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  35224602 ctagccgcctctctctaaaccctattctttctgaatatccgttggaattgactagcacgggtcatcgaagaagctctgttcgtgtggactgagtagaggc 35224701  T
Q  191 atcgctgctttgctttgctcgtgatcagaaa 221  Q
    |||| |   ||||||||||||||||||||||    
T  35224702 atcgatatcttgctttgctcgtgatcagaaa 35224732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 242
Target Start/End: Complemental strand, 10676697 - 10676570
Alignment:
Q  115 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtga 214  Q
    ||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||| | || ||||||||||||    
T  10676697 ttctctctgaatctctgttggtattggctagaaccggtcatcggagaagttctgtttgtgtggactaaatagaggcatcgctacgttactttgctcgtga 10676598  T
Q  215 tcagaaatatttcttctacacaggttct 242  Q
    ||||||| | || | ||||| |||||||    
T  10676597 tcagaaacaattatgctacaaaggttct 10676570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 242
Target Start/End: Complemental strand, 10890337 - 10890210
Alignment:
Q  115 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtga 214  Q
    ||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||| | || ||||||||||||    
T  10890337 ttctctctgaatctctgttggtattggctagaaccggtcatcggagaagttctgtttgtgtggactaaatagaggcatcgctacgttactttgctcgtga 10890238  T
Q  215 tcagaaatatttcttctacacaggttct 242  Q
    ||||||| | || | ||||| |||||||    
T  10890237 tcagaaacaattatgctacaaaggttct 10890210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 20579488 - 20579418
Alignment:
Q  172 gtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttct 242  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  20579488 gtgtggactgaatagaggcatcgctgctttgctttgctcgtgatcagaattatttcttctacaaaggttct 20579418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 10825391 - 10825329
Alignment:
Q  184 tagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  10825391 tagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacagaggttctgctc 10825329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 10690368 - 10690423
Alignment:
Q  115 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgtt 170  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||||    
T  10690368 ttctctctgaatctctgttggtattggctagcatcggtcatcggagaagttctgtt 10690423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 10904008 - 10904063
Alignment:
Q  115 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgtt 170  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||||    
T  10904008 ttctctctgaatctctgttggtattggctagcatcggtcatcggagaagttctgtt 10904063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 1550 - 1319
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  1550 aaatagaacccttgtgttgaaacatgactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 1451  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1450 ctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 1351  T
Q  217 agaaatatttcttctacacaggttctgctcgt 248  Q
    |||||||||||||||||| |||||||||||||    
T  1350 agaaatatttcttctacaaaggttctgctcgt 1319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 10443 - 10212
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  10443 aaatagaacccttgtgttgaaacatgactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 10344  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10343 ctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 10244  T
Q  217 agaaatatttcttctacacaggttctgctcgt 248  Q
    |||||||||||||||||| |||||||||||||    
T  10243 agaaatatttcttctacaaaggttctgctcgt 10212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 22172461 - 22172690
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  22172461 aaatagaacccttgtgttgaagcattactaatcttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 22172560  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22172561 ctctctgaatcttcgttggaattggctagcactggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 22172660  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  22172661 agaaatatttcttctacaaaggttctgctc 22172690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 6095122 - 6095351
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||    
T  6095122 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttctt 6095221  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6095222 ctctctgaatcttcattggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgctgttttgctttgctcgtgatc 6095321  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  6095322 agaaatatttcttctacaaaggttctgctc 6095351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 21941641 - 21941872
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaac--tttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttg 114  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  21941641 aaatagaacccttgtgttgaagcattactaaccctttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttg 21941740  T
Q  115 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtga 214  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21941741 ttctctctgaatcttcgttggaattagctagcactggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtga 21941840  T
Q  215 tcagaaatatttcttctacacaggttctgctc 246  Q
    ||||||| |||||| ||||| |||||||||||    
T  21941841 tcagaaagatttctgctacaaaggttctgctc 21941872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 15327199 - 15327428
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||  |||||    
T  15327199 aaatagaacctttgtgttgaagcattactaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagctgccgctctctaaaacttgtt 15327298  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15327299 ctctttgaatctccgttggaattggctagcaccggtcatcggagaatttatgttcatgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 15327398  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||| ||||    
T  15327399 agaaatatttcttctacaaaggttcagctc 15327428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 15507568 - 15507797
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||  |||||    
T  15507568 aaatagaacctttgtgttgaagcattactaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagctgccgctctctaaaacttgtt 15507667  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15507668 ctctttgaatctccgttggaattggctagcaccggtcatcggagaatttatgttcatgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 15507767  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||| ||||    
T  15507768 agaaatatttcttctacaaaggttcagctc 15507797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 28549023 - 28549203
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaa-gttgtgaaacgctagccgccgctctctaaactttgt 115  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| | ||    
T  28549023 aaatagaacccttgtgttgaagcatgactaacattttgtgagtgcttaacctaattcacaaaaagttgtgaaaccctagccgccgctctctaaacctggt 28549122  T
Q  116 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgct 196  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28549123 tctctctgaatctctgttggaattggctagcactggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgct 28549203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 93 - 246
Target Start/End: Original strand, 24644001 - 24644153
Alignment:
Q  93 agccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcat 192  Q
    |||||| ||||||||||| | || |||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24644001 agccgctgctctctaaacctagt-ctctctgaatctccgttgtaattggctagcatcggtcatcggagaagttctgttcgtgtggactgagtagaggcat 24644099  T
Q  193 cgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    ||||||| |||||||||||||||||||||||||| || |||| |||||||||||    
T  24644100 cgctgctctgctttgctcgtgatcagaaatatttgttatacaaaggttctgctc 24644153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 29230430 - 29230568
Alignment:
Q  57 agtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatc 156  Q
    |||||||||||||| | |||||||||||||||| |||||||||||||  ||||| ||||||||||| ||||| |||||||||||||||| | | || |||    
T  29230430 agtgcttaacctaactaacaaaagttgtgaaaccctagccgccgctccttaaaccttgttctctcttaatctccgttggaattggctagta-ctgttatc 29230528  T
Q  157 ggagaagttctgttcgtgtggactgagtagaggcatcgct 196  Q
     |||||||||| |||||||||||| |||||||||||||||    
T  29230529 agagaagttcttttcgtgtggactaagtagaggcatcgct 29230568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 24796170 - 24796039
Alignment:
Q  60 gcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcgga 159  Q
    ||||||||||||||||||| ||| | |||| |||| ||||||||||||| | | || || ||||||||||||||| |||| |||||||||||||||||||    
T  24796170 gcttaacctaattcacaaa-gttat-aaac-ctagacgccgctctctaatcctagt-ctttctgaatcttcgttgaaattagctagcaccggtcatcgga 24796075  T
Q  160 gaagttctgttcgtgtggactgagtagaggcatcgct 196  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  24796074 gaagttctgttcg-gtggactcagtagaggcatcgct 24796039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 29328764 - 29328993
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  29328764 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 29328863  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29328864 ctctctgaatcttcgttggaattggctagcaccggtcatcagagaagttatgttcgtgtgaactgagtagaggcatcgctgctttgctttgctcgtgatc 29328963  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  29328964 agaaatatttcttctacaaaggttctgctc 29328993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 11535293 - 11535064
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||    
T  11535293 aaatagaacccttgtgttgaagcattactaactttttgttagtgcttaacctaattcacaaaagttgtgaaaccctagccaccgctctctaaaccttgtt 11535194  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11535193 ctctcttaatcttcgttggaattggctagcaccgatcatcggagaagttctgttcgtgtggactgagtagagacatcgctgctttgctttgctcgtgatc 11535094  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  11535093 agaaagatttctactacaaaggttctgctc 11535064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 11542211 - 11541982
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  11542211 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgttctctaaaccttgtt 11542112  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11542111 ctctcttaatcttcgttggaattggctagcaccgatcaccggagaagttctgttcgtgtggactgagtagaggtatcgctgctttgctttgctcgtgatc 11542012  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  11542011 agaaagatttctactacaaaggttctgctc 11541982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 12739518 - 12739747
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  12739518 aaatagaacctttgttttgtagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccgtagccgccgctctctaaaccttgtt 12739617  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  12739618 ctctcttaatctccgttggaattggctagcaccggtcatcggagaagttctgtttttgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 12739717  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  12739718 agaaatatttcttctacaaaggttctgctc 12739747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 12751835 - 12752064
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||| |||||    
T  12751835 aaatggaaccattgtgttgaagcattactaactttttgtgagtgcttaacctcatttacaaaagttgtgaaaccgtagccgccgctctctaaaccttgtt 12751934  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12751935 ctctctaaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggacggagtagaggcatcgctgctttgctttgctcgtgatc 12752034  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  12752035 agaaatatttcttctacaaaggttctgctc 12752064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 15153444 - 15153672
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaac-tttgt 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||    
T  15153444 aaatagaacccttgtgttgaagcattacaaactttttgtgagtgctaaacctcattcacaaaagttgtgaaac-ctagccgccgctctctaaacatttgt 15153542  T
Q  116 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 215  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15153543 tctctctgaatctccgttggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgcttctttgctttgctcgtgat 15153642  T
Q  216 cagaaatatttcttctacacaggttctgctc 246  Q
    ||||||||||| ||||||| |||||||||||    
T  15153643 cagaaatattt-ttctacaaaggttctgctc 15153672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 18562009 - 18562238
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||    
T  18562009 aaatagaacccttgtgttgaagtattactaactttttgtgagtgctaaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttctt 18562108  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||    
T  18562109 ctctctgaatctccgttggaattggctagcaccggtcatcggagaagttatgttcgtgtagactaagtagaggcatcgctgttttgctttgctcgtgatc 18562208  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    | ||||| |||| ||||| |||||||||||    
T  18562209 aaaaataattctactacaaaggttctgctc 18562238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 46 - 246
Target Start/End: Complemental strand, 2653190 - 2652990
Alignment:
Q  46 aactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctag 145  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||  |||||||||||||||    
T  2653190 aactttttatgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgttctctctgattctctgttggaattggctag 2653091  T
Q  146 caccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgct 245  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  2653090 caccagtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctgctacaaaggttctgct 2652991  T
Q  246 c 246  Q
    |    
T  2652990 c 2652990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 9978837 - 9979033
Alignment:
Q  50 ttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcacc 149  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  9978837 ttttgtgagtgcttaacctaattcgcaaaagttgtgaaaccctagccgccgctctctaaaccttcttctctctgaatcttcgttggaattggctagcacc 9978936  T
Q  150 ggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    |||||||| | |||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||| |||| ||||| |||||||||||    
T  9978937 ggtcatcgaaaaagttctgttcgtgtggactaagtagaggcatcgctattttgctttgctcgtgatcagaaatagttctactacaaaggttctgctc 9979033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 11557298 - 11557192
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||| |||||||||| |      |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  11557298 aaatagaacccttatgttgaagcact------ttttggtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 11557205  T
Q  117 ctctctgaatctt 129  Q
    |||||||||||||    
T  11557204 ctctctgaatctt 11557192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 24850790 - 24850719
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaa 88  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  24850790 aaatagaacccttatgttgaagcattacgaactttttgggagtgcttaacctaattcacaaaagttgtgaaa 24850719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 13393138 - 13393217
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagcc 96  Q
    |||||||||||||||| |||| ||||||  | |||||||||   |||||||||||| |||||||||||||||| ||||||    
T  13393138 aaatagaacccttgtgctgaaacattacatagtttttgtgaacacttaacctaatttacaaaagttgtgaaaccctagcc 13393217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 18256897 - 18256843
Alignment:
Q  169 ttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaata 223  Q
    |||||||||||| |||| ||| |||||| | ||||||||||||||||||||||||    
T  18256897 ttcgtgtggactaagtataggtatcgctacgttgctttgctcgtgatcagaaata 18256843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 10571797 - 10571568
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  10571797 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 10571698  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10571697 ctctctgaatcttcgttggaattgactagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 10571598  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  10571597 agaaagatttctgctacaaaggttctgctc 10571568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 10578563 - 10578334
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  10578563 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 10578464  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10578463 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgttttgctcgtgatc 10578364  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  10578363 agaaaaatttctgctacaaaggttctgctc 10578334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 15341450 - 15341221
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  15341450 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 15341351  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15341350 ctctctgaatcttcgttggaattggctagcaccgatcatcggagaagttctgttcatgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 15341251  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||| ||||||| |||||||||||    
T  15341250 agaaatattttttctacaaaggttctgctc 15341221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 15356817 - 15356588
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  15356817 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 15356718  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15356717 ctctctgaatcttcgttggaattggctagcaccgatcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcatgatc 15356618  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||| ||||||| |||||||||||    
T  15356617 agaaatattttttctacaaaggttctgctc 15356588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 15600115 - 15599886
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  15600115 aaatagaacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 15600016  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15600015 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 15599916  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  15599915 agaaagatttctgctacaaaggttctgctc 15599886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 15606660 - 15606431
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  15606660 aaatagaacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 15606561  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15606560 ctctctgaatcttcgttggaattggctagcaccggtcatcgaagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 15606461  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  15606460 agaaagatttctgctacaaaggttctgctc 15606431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 16481688 - 16481460
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||    
T  16481688 aaatagaacccttgtgttgaagcattacttactttttgtgagtgcttaacctaattcacaaaagttgtgaaactc-agccgccgctctctaaaccttgtt 16481590  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16481589 ctctctgaatcttcgttggaattggctagcaccagtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 16481490  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  16481489 agaaagatttctgctacaaaggttctgctc 16481460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 46 - 246
Target Start/End: Original strand, 6111105 - 6111305
Alignment:
Q  46 aactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctag 145  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6111105 aactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctag 6111204  T
Q  146 caccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgct 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6111205 caccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgct 6111304  T
Q  246 c 246  Q
    |    
T  6111305 c 6111305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 13517785 - 13518013
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  13517785 aaatagaacccttgtgttgaagcatgactaacttaatgtgagtgctaaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaacattgtt 13517884  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13517885 ctctttgaatctccgttggaattggctagcaccggtcatcagagaagttatgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 13517984  T
Q  217 agaaatatttcttctacacaggttctgct 245  Q
    |||||||||||||||||| ||||||||||    
T  13517985 agaaatatttcttctacaaaggttctgct 13518013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 17196979 - 17196748
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||    
T  17196979 aaatagaacccttgtgttgaagcattactaactttttgtttgtgcttaacttaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttgtt 17196880  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||    
T  17196879 ctctttgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaagcatcactgttttgctttactcgtgatc 17196780  T
Q  217 agaaatatttcttctacacaggttctgctcgt 248  Q
    |||||||||||||||||| |||||||||||||    
T  17196779 agaaatatttcttctacaaaggttctgctcgt 17196748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 18537971 - 18538200
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||| |||||| ||||||||||  ||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |    
T  18537971 aaatagaactcttgtgctgaagcattatgaaccttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgtcgctctctaaaccttggt 18538070  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18538071 ctctctgaatctccgtttgaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 18538170  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  18538171 agaaagatttctgctacaaaggttctgctc 18538200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 32056276 - 32056059
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||    
T  32056276 aaatagaacccttgtgttcaagcattactaactttttgtgattgcttaacctaattcacaaaagttgtgaagccctagccgccgctctctaaaccttgtt 32056177  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32056176 ctctctgaatttccgttgaaattggctagcaccggtcatcagagaagttctgttcgtgtggaccgagtagaggcatcgctgctttgctttgctcgtgatc 32056077  T
Q  217 agaaatatttcttctaca 234  Q
    ||||| |||||| |||||    
T  32056076 agaaagatttctgctaca 32056059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 1646727 - 1646498
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| || |||||||||||| |||||    
T  1646727 aaatagaacccttgtgttgaagcattactaattttttgtgagtgcttaacctaattaacaaaagttgtgaaaccctagtcgtcgctctctaaaccttgtt 1646628  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||| ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||     
T  1646627 ctctttgaatctccgttagaattggcttgcaccggtcatcggagaagttctgttcgtgtggactaagtagaggtatcgctactttgctttgctcgtgatt 1646528  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||| ||||||| |||||||||||    
T  1646527 agaaatatttattctacaaaggttctgctc 1646498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 72 - 246
Target Start/End: Original strand, 13212331 - 13212505
Alignment:
Q  72 tcacaaaagttgtgaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttc 171  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13212331 tcacaaaagttgtgaaaccctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttttgttc 13212430  T
Q  172 gtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13212431 gtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 13212505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 8491428 - 8491589
Alignment:
Q  85 gaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagt 184  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8491428 gaaaccctagccgccgctctctaaaccttgttctctctgaatctccgttggaattggctagcaccgatcatcggagaagttctgttcgtgtggactgagt 8491527  T
Q  185 agaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8491528 agaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 8491589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 17137355 - 17137505
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||  ||| ||||||||||||||||    
T  17137355 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattaacaaaagttgtgaaacactagttgcctctctctaaactttgtt 17137454  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttct 167  Q
    |||| ||||||| |||||||||||||||||||| |||||||||||||||||    
T  17137455 ctctttgaatctccgttggaattggctagcaccagtcatcggagaagttct 17137505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 23014574 - 23014348
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttg--tgagtg-cttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaacttt 113  Q
    |||||||||||||||| |||||||||| ||||||||||  |||    |||||||||||||  |||||||  ||||| |||||||||||||||||||| |     
T  23014574 aaatagaacccttgtgctgaagcattagtaactttttggttgaaacacttaacctaattct-aaaagtta-gaaaccctagccgccgctctctaaaccta 23014477  T
Q  114 gttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtg 213  Q
    || ||||||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  23014476 gt-ctctctgaatctctgttggaattggcttgcaccgatcatcggagaagttctgttcgtgtggactgagtagagacatcgccgctttgctttgctcgtg 23014378  T
Q  214 atcagaaatatttcttctacacaggttctg 243  Q
    |||| ||||||||||| |||| ||||||||    
T  23014377 atcataaatatttcttatacaaaggttctg 23014348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 16201195 - 16201420
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtga-gtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgt 115  Q
    |||| ||||||||||| ||||| ||||   ||||||  ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||  | ||    
T  16201195 aaattgaacccttgtgctgaagtattatagacttttgttgaagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaagctagt 16201294  T
Q  116 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 215  Q
     | |||| ||| |  ||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  16201295 -cgctctaaatttctgttggaattggcttgcactggtcatcggataagttctgttcgtgtggactgagtagaggcatcactgctttgcttttctcgtgat 16201393  T
Q  216 cagaaatatttcttctacacaggttct 242  Q
    |||||| |||| | ||||| |||||||    
T  16201394 cagaaacatttatgctacaaaggttct 16201420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 17780349 - 17780243
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17780349 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgtt 17780250  T
Q  117 ctctctg 123  Q
    |||||||    
T  17780249 ctctctg 17780243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 19081650 - 19081544
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19081650 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgtt 19081551  T
Q  117 ctctctg 123  Q
    |||||||    
T  19081550 ctctctg 19081544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 13258661 - 13258746
Alignment:
Q  157 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttct 242  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13258661 ggagaagttttgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttct 13258746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 17780246 - 17780165
Alignment:
Q  165 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  17780246 tctgttcgtgtggactgagtagaggcatcgctgctttggtttgctcgtgatcagaaatatttcttctacaaaggttctgctc 17780165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 19081547 - 19081466
Alignment:
Q  165 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  19081547 tctgttcgtgtggactgagtagaggcatcgctgctttggtttgctcgtgatcagaaatatttcttctacaaaggttctgctc 19081466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 240
Target Start/End: Original strand, 25801214 - 25801392
Alignment:
Q  58 gtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcg 157  Q
    ||||||||||||||||  |||||||  ||||| |||| ||| |||||||||||  | |||||||||||||| ||||| ||||| ||||||||  ||| ||    
T  25801214 gtgcttaacctaattct-aaaagtta-gaaac-ctagtcgctgctctctaaaccctattctctctgaatctccgttgaaattgcctagcacca-tcaccg 25801309  T
Q  158 gagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggtt 240  Q
    || ||||| ||||||||||||||| |||||||| ||||| | ||||||||||||| |||||||| | |||| ||||| |||||    
T  25801310 gataagttatgttcgtgtggactgggtagaggcgtcgctacattgctttgctcgtaatcagaaacaattctgctacaaaggtt 25801392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 54333264 - 54333200
Alignment:
Q  152 tcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    ||||| |||||| ||||||||||| |||||||||||| ||||| | ||||| |||||||||||||    
T  54333264 tcatcagagaaggtctgttcgtgtagactgagtagagacatcgttactttgttttgctcgtgatc 54333200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 22791064 - 22790835
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  22791064 aaatagaacccttgttttgtagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctatactttgtt 22790965  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  22790964 ctctttgaatctccgtgggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgcttctttgctttgctcgtcatc 22790865  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    |||||||||||||||||| |||||||||||    
T  22790864 agaaatatttcttctacaaaggttctgctc 22790835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 41664747 - 41664970
Alignment:
Q  23 aacccttgtgttgaagcattactaactttttgt-gagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgttctctc 121  Q
    ||||||||||||||||||||| ||| ||| ||| ||    |||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||    
T  41664747 aacccttgtgttgaagcattattaaatttatgttgaacatttaacctaattcacaaaagttgtgaaaccctagccgtcgttctctaaaccttgttctctc 41664846  T
Q  122 tgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaa 221  Q
     |||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||| |||||||| | ||||| ||||||||||||||||    
T  41664847 cgaatctccgttggaattggctagcaccgatcatcggggaa-ttctgttcgtgtggactaagtagaagcatcgctacgttgctatgctcgtgatcagaaa 41664945  T
Q  222 tatttcttctacacaggttctgctc 246  Q
     | |||| ||||| | |||||||||    
T  41664946 caattctactacaaatgttctgctc 41664970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 21329473 - 21329374
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21329473 aaatagaacccttgtgttgaaacattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaactttgtt 21329374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 18620811 - 18620988
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgt-gagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgt 115  Q
    |||||||||||||||| | |||||||||| ||||||||| ||   |||||||||||||| | |||||||||||  ||||  ||| |||||||||||||||    
T  18620811 aaatagaacccttgtgctaaagcattactgactttttgttgaacacttaacctaattcaaagaagttgtgaaatcctagttgccactctctaaactttgt 18620910  T
Q  116 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatc 193  Q
    ||| |||||||||  ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| ||||    
T  18620911 tctatctgaatctctgttggaattggctagcaccagtcatcggagaaattctgttcgtgtggactgagtggagacatc 18620988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 27353433 - 27353538
Alignment:
Q  116 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 215  Q
    ||||||||||||| || ||||||||||| | |||||||||| |||||||||| | |||||||||||||||||||||||||| | ||||||||||||||||    
T  27353433 tctctctgaatctccgctggaattggctcgtaccggtcatcagagaagttctctacgtgtggactgagtagaggcatcgctacgttgctttgctcgtgat 27353532  T
Q  216 cagaaa 221  Q
    ||||||    
T  27353533 cagaaa 27353538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 24694689 - 24694462
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||| |||||||||| ||||||||| | |||    
T  24694689 aaatagaacccttgtgttgaagcattactaactttttggg--tgcttaacctaattcacaaaagttgtgaaaccctagccgccgttctctaaacctcgtt 24694592  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694591 ctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 24694492  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  24694491 agaaagatttctgctacaaaggttctgctc 24694462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 19713731 - 19713514
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||    
T  19713731 aaatagaacccttgtgttgaagcataactaacttttagtgagtgcttaacctaattcacaaaagttgtgaaaccctagctgccgctctctaaaccttttt 19713632  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||    
T  19713631 ctctctgaatctccgttggaattggctagcaccagtcatcggagaagttctgttcatgtggactaagtagaggcatcgttgttttgctttgctcgtgatc 19713532  T
Q  217 agaaatatttcttctaca 234  Q
    ||||||| |||| |||||    
T  19713531 agaaataattctactaca 19713514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 24701453 - 24701231
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||| |||||||||| ||||||||| | |||    
T  24701453 aaatagaacccttgtgttgaagcattactaactttttggg--tgcttaacctaattcacaaaagttgtgaaaccctagccgccgttctctaaacctcgtt 24701356  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     |||||||||||    
T  24701355 ctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctattcgtgtggactgagtagaggcatcgctgctt-----tgctcgtgatc 24701261  T
Q  217 agaaatatttcttctacacaggttctgctc 246  Q
    ||||| |||||| ||||| |||||||||||    
T  24701260 agaaagatttctgctacaaaggttctgctc 24701231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 28 - 246
Target Start/End: Complemental strand, 18565681 - 18565459
Alignment:
Q  28 ttgtgttgaagcattactaacttttt-gtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgttctctctgaat 126  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||| | |||||    
T  18565681 ttgtgttgaagcattacaaacttttttgtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccggtctctaaaccttgttctatttgaat 18565582  T
Q  127 cttcgttggaattggctagcaccggt--catcggagaagttctgttcgtgtggactgagtagaggca--tcgctgctttgctttgctcgtgatcagaaat 222  Q
    || |||||||||||||||||||||||  |||| |||||||| |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  18565581 ctccgttggaattggctagcaccggtcacatcagagaagttttgtttgtgtggactgagtagaggcatctcgctgctttgctttgctcgtgatcagaaat 18565482  T
Q  223 atttcttctacacaggttctgctc 246  Q
    |||| ||||||| |||||||||||    
T  18565481 attt-ttctacaaaggttctgctc 18565459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 19706403 - 19706230
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgtt 116  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||    
T  19706403 aaatagaacccttatgttgaagcataactaacttttagtgagtgcttaacctaattcacaaaagttgtgaaaccctagccgccgctctctaaaccttctt 19706304  T
Q  117 ctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggc 190  Q
    |||||| ||| |  |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  19706303 ctctctaaatatctgttgaaattggctagcaccggtcatcggagaagttatgttcgtgtggactaagtagaggc 19706230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 938740 - 938577
Alignment:
Q  57 agtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatc 156  Q
    |||||| ||||||||||||||| ||| | |||| |||||||||||||||||||| || |||||||| ||||| ||||||||| |||||||||||||||||    
T  938740 agtgctaaacctaattcacaaa-gttat-aaac-ctagccgccgctctctaaaccttattctctct-aatctccgttggaatcggctagcaccggtcatc 938645  T
Q  157 ---ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaa 221  Q
       | |||||||||||||||||||| |||||||| |||||||| | ||| |||| | |||||| ||||    
T  938644 atcgtagaagttctgttcgtgtggattgagtagaagcatcgctacgttgttttgtttgtgatcggaaa 938577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 39539653 - 39539732
Alignment:
Q  165 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgc 244  Q
    |||||| ||||||||||||||||| ||||||| | |||||||||| |||||||||||   |||| ||||| |||||||||    
T  39539653 tctgtttgtgtggactgagtagagacatcgctacgttgctttgcttgtgatcagaaactattctgctacaaaggttctgc 39539732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 19288 - 19506
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtga-gtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgt 115  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| | ||    
T  19288 aaatagaacccttgtgttgaaacattactaactttttgtgaagtgcttaacctaattcacaaaagttgtgaaaccctagccgccactctctaaacgtagt 19387  T
Q  116 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 215  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19388 tctctctgaatctccgttgtaattggctagcaccggtcatcggagaagttctgttcatgtggactgagtagaggcatcgctgctttgctttgctcgtgat 19487  T
Q  216 cagaaatatttcttctaca 234  Q
    |||||||||||||||||||    
T  19488 cagaaatatttcttctaca 19506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 96 - 330
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttg-----tgagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaact 111  Q
    |||||||||||||||||||||||||||  |||||||||     |||||||||||||||||||||||||||||||||||  ||||||||||| |||||||     
T  96 aaatagaacccttgtgttgaagcattatgaactttttgaaaagtgagtgcttaacctaattcacaaaagttgtgaaaccatagccgccgctatctaaacc 195  T
Q  112 ttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcg 211  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  196 ttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagacatcgctgctttgctttgcttg 295  T
Q  212 tgatcagaaatatttcttctacacaggttctgctc 246  Q
    ||||||||||||||||||||||| |||||||||||    
T  296 tgatcagaaatatttcttctacaaaggttctgctc 330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 6498 - 6733
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtg------agtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaac 110  Q
    ||||||||||||||||||||||||| || |||||||| |       ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  6498 aaatagaacccttgtgttgaagcatgacgaacttttttttttttttagtgcttaacctaattcacaaaagtggtgaaaccctagccgccgctctctaaac 6597  T
Q  111 tttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctc 210  Q
     ||||||||| ||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  6598 cttgttctctttgaatctccattggaattggctagcaccagtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctattttgctttgctc 6697  T
Q  211 gtgatcagaaatatttcttctacacaggttctgctc 246  Q
    |||||| |||||| |||| ||||| |||||||||||    
T  6698 gtgatctgaaataattctactacaaaggttctgctc 6733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 229622 - 229389
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgtg----agtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactt 112  Q
    ||||||||||||| ||||||||||| || |||||||| |     ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |    
T  229622 aaatagaacccttctgttgaagcatgacgaacttttttttttttagtgcttaacctaattcacaaaagtggtgaaaccctagccgccgctctctaaacct 229523  T
Q  113 tgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgt 212  Q
    |||||||| ||||||| | ||| || ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||  ||||||||||||||    
T  229522 tgttctctttgaatctccattgaaactggctagcaccggtcatcggagaagttctgttcatgtggactaagtataggcatcgctattttgctttgctcgt 229423  T
Q  213 gatcagaaatatttcttctacacaggttctgctc 246  Q
    ||||||||||| ||||  |||| |||||||||||    
T  229422 gatcagaaataattctagtacaaaggttctgctc 229389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 114 - 246
Target Start/End: Original strand, 4313 - 4445
Alignment:
Q  114 gttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtg 213  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4313 gttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtg 4412  T
Q  214 atcagaaatatttcttctacacaggttctgctc 246  Q
    ||||||||||||||||||||| |||||||||||    
T  4413 atcagaaatatttcttctacaaaggttctgctc 4445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 1129 - 986
Alignment:
Q  99 cgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgc 198  Q
    |||||||||||||| || |||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  1129 cgctctctaaacttagt-ctctctgaatcaccgttggaattggctagcaccggtcatcggagaagttatgttcgtgtggactgagtagagacatcgctgc 1031  T
Q  199 tttgctttgctcgtgatcagaaatatttcttctacacaggttctg 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  1030 tttgctttgctcgtgatcagaaatatttcttctacaaaggttctg 986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 104 - 246
Target Start/End: Original strand, 26276 - 26418
Alignment:
Q  104 tctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgc 203  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26276 tctaaactttgttctctctgaatctttgttggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgctgctttgc 26375  T
Q  204 tttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    ||||||| |||| ||||| |||| | ||||| |||||||||||    
T  26376 tttgctcatgataagaaaaatttatactacaaaggttctgctc 26418  T

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Target: scaffold0032 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 107479 - 107249
Alignment:
Q  17 aaatagaacccttgtgttgaagcattactaactttttgt-gagtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgt 115  Q
    |||||||||||||||| |||||||||||||| ||||||| ||   |||||  |||||||||||||||||||||| ||||||||| |||| ||||  ||||    
T  107479 aaatagaacccttgtgctgaagcattactaagtttttgttgaacacttaagataattcacaaaagttgtgaaaccctagccgccactctttaaatcttgt 107380  T
Q  116 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 215  Q
    ||||||||||||| ||||||||||||||  ||| |||||||||||||||||||||||| ||||||  |||||||||| ||| | |||||||||| |||||    
T  107379 tctctctgaatctccgttggaattggctgacactggtcatcggagaagttctgttcgtttggactatgtagaggcattgctacgttgctttgcttgtgat 107280  T
Q  216 cagaaatatttcttctacacaggttctgctc 246  Q
    |  ||| | |||||||||| ||||| |||||    
T  107279 cgtaaacaattcttctacaaaggttatgctc 107249  T

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Target: scaffold0203 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 29302 - 29186
Alignment:
Q  130 cgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttctt 229  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  29302 cgttggaattggctagcaccggccatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaagatttctg 29203  T
Q  230 ctacacaggttctgctc 246  Q
    ||||| |||||||||||    
T  29202 ctacaaaggttctgctc 29186  T

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Target: scaffold0502 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 57 - 242
Target Start/End: Original strand, 62 - 247
Alignment:
Q  57 agtgcttaacctaattcacaaaagttgtgaaacgctagccgccgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatc 156  Q
    ||||||| |||||||||| |||||| |||||||  || |||||||||||||||| |||||||||||| |||| ||||| | |||||||||||| |||||     
T  62 agtgctttacctaattcataaaagtggtgaaacagtatccgccgctctctaaaccttgttctctctggatctccgttgaagttggctagcaccagtcatt 161  T
Q  157 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttct 242  Q
     |||||||| ||||||| |||||||||||||| |||||||   ||  |||||| ||||| ||||| |||| | ||||| |||||||    
T  162 agagaagttatgttcgtatggactgagtagagacatcgctatgtttgtttgcttgtgattagaaacatttttgctacaaaggttct 247  T

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Target: scaffold0657 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 3870 - 3922
Alignment:
Q  194 gctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3870 gctgctttgctttgctcgtgatcagaaatatttcttctacaaaggttctgctc 3922  T

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Target: scaffold0039 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 87829 - 87916
Alignment:
Q  158 gagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatatttcttctacacaggttctgctc 246  Q
    |||||||| ||||||| |||||| ||||||||||||||| |||| ||||||| ||||||| ||| | || | ||||| |||||||||||    
T  87829 gagaagttatgttcgt-tggactaagtagaggcatcgctactttactttgcttgtgatcataaacaattatactacaaaggttctgctc 87916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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