View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15795_high_3 (Length: 448)

Name: NF15795_high_3
Description: NF15795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15795_high_3
NF15795_high_3
[»] chr7 (3 HSPs)
chr7 (1-379)||(3437159-3437537)
chr7 (36-202)||(14798952-14799118)
chr7 (36-202)||(15245944-15246110)
[»] chr3 (4 HSPs)
chr3 (1-383)||(46239938-46240320)
chr3 (2-379)||(23541336-23541713)
chr3 (7-217)||(30038202-30038412)
chr3 (38-223)||(34584674-34584859)
[»] chr4 (2 HSPs)
chr4 (5-115)||(6869027-6869137)
chr4 (48-226)||(11318291-11318469)
[»] chr5 (1 HSPs)
chr5 (6-223)||(29878125-29878342)
[»] chr8 (1 HSPs)
chr8 (6-223)||(3921266-3921483)
[»] scaffold0140 (1 HSPs)
scaffold0140 (60-160)||(40053-40153)
[»] scaffold0121 (1 HSPs)
scaffold0121 (48-226)||(43429-43607)
[»] chr2 (1 HSPs)
chr2 (48-226)||(18131561-18131739)
[»] chr1 (1 HSPs)
chr1 (38-223)||(30964560-30964745)


Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 3437159 - 3437537
Alignment:
Q  1 actccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437159 actccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgag 3437258  T
Q  101 tagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaag 200  Q
     |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3437259 cagttgaccaccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcatccatcaaaacaaaag 3437358  T
Q  201 taaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3437359 taaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactgtttccaggacacactcttttaagttcagcagcatatc 3437458  T
Q  301 tccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437459 tccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc 3437537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 14798952 - 14799118
Alignment:
Q  36 gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc 135  Q
    ||||||||||  ||||| || | ||||||||| || |||||||| ||||| || ||||| |  |  | |||||| ||||| |||||||| || ||||| |    
T  14798952 gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc 14799051  T
Q  136 catcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagta 202  Q
    ||||||| ||||||||||| |||||| || | || || || ||||| || |||||||| || |||||    
T  14799052 catcaacaccaataaatggtctacatgcactagtgaatccctttttacatccatcaaagcagaagta 14799118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 15245944 - 15246110
Alignment:
Q  36 gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc 135  Q
    ||||||||||  ||||| || | ||||||||| || |||||||| ||||| || ||||| |  |  | |||||| ||||| |||||||| || ||||| |    
T  15245944 gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc 15246043  T
Q  136 catcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagta 202  Q
    ||||||| ||||||||||| |||||| || | || || || ||||| || |||||||| || |||||    
T  15246044 catcaacaccaataaatggtctacatgcactagtgaatccctttttacatccatcaaagcagaagta 15246110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 46240320 - 46239938
Alignment:
Q  1 actccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240320 actccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgag 46240221  T
Q  101 tagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaag 200  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46240220 cagttgacccccatactttgtctttagatgacaaccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcaaccatcaaaacaaaag 46240121  T
Q  201 taaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||    
T  46240120 taaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactatttccaggacacactcttttaagttcagcagcatatc 46240021  T
Q  301 tccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttg 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46240020 tccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgtttagctttccacgccctacctttg 46239938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 2 - 379
Target Start/End: Complemental strand, 23541713 - 23541336
Alignment:
Q  2 ctccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagt 101  Q
    |||||||||||| ||||||||| |||| ||||  ||||| || || |||||||| |  ||||| || |||||||||||||| ||||||||| | || ||     
T  23541713 ctccatgaaccatttccagctttccctacactttgtttctactattccaaatgccaatggaaaatattggtcatttgggtccctaccaacaactattaga 23541614  T
Q  102 agttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagt 201  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||| |||||| ||||| |||||  | || ||||| || |||||||||||||||||||    
T  23541613 agttgacccccatactttgtctttaaatgacatccatctaccccaacaaatggtctacacccattgatgaaacctttcttacagccatcaaaacaaaagt 23541514  T
Q  202 aaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatct 301  Q
    | ||||| |||||||||||||| | |  |||   ||| ||||| ||| | ||  ||||  | ||||||| |  ||| ||||||||||| |||||||| ||    
T  23541513 agaaagaaccaaacctgggttggattgatggggttggtctatccacatttatcttcacattatttccagcattcacccttttaagttctgcagcatacct 23541414  T
Q  302 ccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacc 379  Q
    ||  ||||| |  ||||| | |||||||||||| ||||||||  ||||||| ||||||||||| ||||| ||||||||    
T  23541413 ccaaatcatggcatattgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagccctacc 23541336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 30038202 - 30038412
Alignment:
Q  7 tgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttg 106  Q
    ||||||| |||||  || || |||||||||||||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  |||||    
T  30038202 tgaaccatttccaagtttccttgcactcagtttcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttg 30038301  T
Q  107 acccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaa 206  Q
    |||||| ||  |||| || |  || |||||||| || |||| ||| || || ||  ||  | | |||||||| || || ||||||||||| || ||||||    
T  30038302 acccccgtatcttgttttcaagtggcagccatccactccaacaaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaaa 30038401  T
Q  207 gatccaaacct 217  Q
    || ||||||||    
T  30038402 gacccaaacct 30038412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 34584859 - 34584674
Alignment:
Q  38 ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca 137  Q
    ||||||||| ||||| ||||||||| | || |||||||| |  ||||| || ||||| || || ||||| || ||||| | ||| || | |||||| |||    
T  34584859 ttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacatcca 34584760  T
Q  138 tcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg 223  Q
    || || || || || || ||||| |||||    ||||||| ||| || || ||||| ||||| |||||||||||||| ||||||||    
T  34584759 tctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaaagatccaaatctgggttg 34584674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 6869137 - 6869027
Alignment:
Q  5 catgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagt 104  Q
    ||||||||| ||||| ||| || |||||||||||||||| |  ||||| || || |||||||||||||||||||||||||| || |||||||| |  |||    
T  6869137 catgaaccatttccaactttccttgcactcagtttcaactaccccaaaagctagtggaaagtactggtcatttgggtctctccctacagcaatcaacagt 6869038  T
Q  105 tgacccccata 115  Q
    || ||||||||    
T  6869037 tggcccccata 6869027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 11318291 - 11318469
Alignment:
Q  48 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 147  Q
    |||||||| | |||||| || || ||||||||||||||  |||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  11318291 ccaaatgctaaaggaaaatattgatcatttgggtctcttgcaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 11318390  T
Q  148 taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa 226  Q
    |||| || |||||| |  |   ||| ||||||||||| ||||||||  |||| |||||   ||||||||| || |||||    
T  11318391 taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa 11318469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 29878342 - 29878125
Alignment:
Q  6 atgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagtt 105  Q
    |||||||| ||||| ||| || |||||||||||||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  ||||    
T  29878342 atgaaccatttccaactttccttgcactcagtttcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagtt 29878243  T
Q  106 gacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaa 205  Q
    | ||||||||  |||| || |  || |||||||| || |||| ||| || || ||  ||  | | |||||||| || || ||||||||||| || |||||    
T  29878242 gccccccatatcttgttttcaagtggcagccatccactccaacaaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaa 29878143  T
Q  206 agatccaaacctgggttg 223  Q
    ||| |||||||| |||||    
T  29878142 agacccaaaccttggttg 29878125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 3921266 - 3921483
Alignment:
Q  6 atgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagtt 105  Q
    |||||||| ||||| ||| || |||||||||||||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  ||||    
T  3921266 atgaaccatttccaactttccttgcactcagtttcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagtt 3921365  T
Q  106 gacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaa 205  Q
    | ||||| ||  |||| || |  || |||||||| || |||| ||| || || ||  ||  | | |||||||| || || ||||||||||| || |||||    
T  3921366 gtcccccttatcttgttttcaagtggcagccatccactccaacaaagggtctgcaagcagatatgaaccctttcttacacccatcaaaacagaaataaaa 3921465  T
Q  206 agatccaaacctgggttg 223  Q
    ||| |||||||| |||||    
T  3921466 agacccaaaccttggttg 3921483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 40053 - 40153
Alignment:
Q  60 ggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctac 159  Q
    ||||| ||||||||||||||||||||||||||| |||| |  ||   ||| |||||||| ||||| |||||||| |||||||| || ||||| |||||||    
T  40053 ggaaaatactggtcatttgggtctctaccaacaacaattaaaagagtacctccatacttggtcttaagatgacacccatcaactcctataaagggcctac 40152  T
Q  160 a 160  Q
    |    
T  40153 a 40153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 43607 - 43429
Alignment:
Q  48 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 147  Q
    |||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  43607 ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 43508  T
Q  148 taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa 226  Q
    |||| || |||||| |  |   ||| ||||||||||| ||||||||  |||| |||||   ||||||||| || |||||    
T  43507 taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa 43429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 18131561 - 18131739
Alignment:
Q  48 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 147  Q
    |||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  18131561 ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 18131660  T
Q  148 taaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaa 226  Q
    |||| || |||||| |  |   ||| ||||||||||| ||||||||  |||| |||||   ||||||||| || |||||    
T  18131661 taaaaggtctacatgctgtcaaaaatccttttttgcaaccatcaaatgaaaaataaaagcttccaaacctaggctgtaa 18131739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 30964745 - 30964560
Alignment:
Q  38 ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca 137  Q
    ||||||||| ||||| ||||||||| | || |||||||| |  ||||| || ||||| || || ||||| || ||||| | ||| || | |||||| |||    
T  30964745 ttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacatcca 30964646  T
Q  138 tcaaccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttg 223  Q
    || || || || || || ||||| |||||    ||||||| ||| || || ||||| ||||| |||||||||||||| ||||||||    
T  30964645 tctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaaagatccaaatctgggttg 30964560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University