View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15795_high_4 (Length: 446)

Name: NF15795_high_4
Description: NF15795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15795_high_4
NF15795_high_4
[»] chr3 (14 HSPs)
chr3 (223-417)||(8349969-8350164)
chr3 (274-417)||(8252867-8253010)
chr3 (259-338)||(8260574-8260653)
chr3 (114-159)||(8349624-8349669)
chr3 (285-357)||(8352758-8352830)
chr3 (361-411)||(8356419-8356469)
chr3 (271-338)||(8334018-8334086)
chr3 (270-361)||(8265551-8265642)
chr3 (366-412)||(8258592-8258638)
chr3 (299-361)||(8356339-8356401)
chr3 (361-411)||(8360592-8360642)
chr3 (368-417)||(8334134-8334183)
chr3 (270-361)||(8258478-8258569)
chr3 (361-417)||(8352852-8352908)
[»] chr1 (1 HSPs)
chr1 (25-149)||(44799682-44799806)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 4e-73; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 223 - 417
Target Start/End: Original strand, 8349969 - 8350164
Alignment:
Q  223 gttgattacactcttcttgat-aagtagcagatgtaaattaatactacatgactacaagcgcgagggataatagttaacagggaaataagaaactacaat 321  Q
    |||||||||||||||  | || |||||||||||||||||||| | | |||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  8349969 gttgattacactcttgataattaagtagcagatgtaaattaacattgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataat 8350068  T
Q  322 cggagctccctttgattctcccttcctctttgatttctcttgacatgaattttcagcattatcagaaacttgagatgatgagtttgaagaaggacc 417  Q
     |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8350069 tggagctccctttgatttttccttcctctttgatttctcttgacatgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggacc 8350164  T

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Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 274 - 417
Target Start/End: Original strand, 8252867 - 8253010
Alignment:
Q  274 ctacaagcgcgagggataatagttaacagggaaataagaaactacaatcggagctccctttgattctcccttcctctttgatttctcttgacatgaattt 373  Q
    ||||||||| ||| || ||| |||||||| ||||||||||||| |||| |||||||||||||||| | |||||||||||| |||||||||||||||||||    
T  8252867 ctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctccctttgatttttccttcctctttggtttctcttgacatgaattt 8252966  T
Q  374 tcagcattatcagaaacttgagatgatgagtttgaagaaggacc 417  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  8252967 tcagcattatcagaaacttgagaagatgagtttgaagaaggacc 8253010  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 8260574 - 8260653
Alignment:
Q  259 attaatactacatgactacaagcgcgagggataatagttaacagggaaataagaaactacaatcggagctccctttgatt 338  Q
    ||||||||| ||||||||||| || ||| ||||| |||||||||||||||||||||||||||| ||||||| ||||||||    
T  8260574 attaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctctctttgatt 8260653  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 8349624 - 8349669
Alignment:
Q  114 tttaagctgaaccagattcttgtgccgcaagcaaccaatcattgaa 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8349624 tttaagctgaaccagattcttgtgccgcaagcaaccaatcattgaa 8349669  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 8352758 - 8352830
Alignment:
Q  285 agggataatagttaacagggaaataagaaactacaatcggagctccctttgattctcccttcctctttgattt 357  Q
    ||||||||||||||||||||||||||||||||||||| | |||||| || |||| | |||| |||||| ||||    
T  8352758 agggataatagttaacagggaaataagaaactacaattgaagctccattagatttttcctttctctttaattt 8352830  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 8356419 - 8356469
Alignment:
Q  361 ttgacatgaattttcagcattatcagaaacttgagatgatgagtttgaaga 411  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  8356419 ttgagatgaattttgagcataatcagaaacttgagatgatgagtttgaaga 8356469  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 338
Target Start/End: Original strand, 8334018 - 8334086
Alignment:
Q  271 tgactacaagcgcgaggg-ataatagttaacagggaaataagaaactacaatcggagctccctttgatt 338  Q
    |||||||||||| ||||| ||||||||||||  ||||||||||||||||||| ||| |||| |||||||    
T  8334018 tgactacaagcgtgaggggataatagttaacgaggaaataagaaactacaattggaactccttttgatt 8334086  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 8265551 - 8265642
Alignment:
Q  270 atgactacaagcgcgagggataatagttaacagggaaataagaaactacaatcggagctccctttgattctcccttcctctttgatttctct 361  Q
    |||||||||| || ||| ||||| ||||| ||||||||| | | |||||||| |||||||||||||||| | |||| ||||||  |||||||    
T  8265551 atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctccctttgatttttccttactcttttgtttctct 8265642  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 8258592 - 8258638
Alignment:
Q  366 atgaattttcagcattatcagaaacttgagatgatgagtttgaagaa 412  Q
    |||| |||||| ||| |||||||||||||||||||||||||||||||    
T  8258592 atgatttttcatcataatcagaaacttgagatgatgagtttgaagaa 8258638  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 8356339 - 8356401
Alignment:
Q  299 acagggaaataagaaactacaatcggagctccctttgattctcccttcctctttgatttctct 361  Q
    ||||||||||||| ||||||||| ||||||||| |||||| | |||| ||||||| |||||||    
T  8356339 acagggaaataaggaactacaattggagctcccattgatttttccttgctctttggtttctct 8356401  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 8360592 - 8360642
Alignment:
Q  361 ttgacatgaattttcagcattatcagaaacttgagatgatgagtttgaaga 411  Q
    |||| ||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  8360592 ttgagatgaattttcaacataatcagaaacttgagatgataagtttgaaga 8360642  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 8334134 - 8334183
Alignment:
Q  368 gaattttcagcattatcagaaacttgagatgatgagtttgaagaaggacc 417  Q
    |||||||||||||| ||| ||||||| || ||||||||||||||||||||    
T  8334134 gaattttcagcattctcataaacttgtgaagatgagtttgaagaaggacc 8334183  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 8258478 - 8258569
Alignment:
Q  270 atgactacaagcgcgagggataatagttaacagggaaataagaaactacaatcggagctccctttgattctcccttcctctttgatttctct 361  Q
    |||||||||| || ||| ||||| |||||  |||||||| | | |||||||| |||||||||||||||| | |||| ||||||  |||||||    
T  8258478 atgactacaaacgtgagagataagagttagtagggaaatgatatactacaattggagctccctttgatttttccttactcttttgtttctct 8258569  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 417
Target Start/End: Original strand, 8352852 - 8352908
Alignment:
Q  361 ttgacatgaattttcagcattatcagaaacttgagatgatgagtttgaagaaggacc 417  Q
    |||| |||| |||||| ||| |||| |||||||||| |||||||| |||||||||||    
T  8352852 ttgagatgatttttcatcataatcataaacttgagaagatgagttcgaagaaggacc 8352908  T

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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 44799806 - 44799682
Alignment:
Q  25 cttaaatttctatgaagaactttatgaaggcttccatatggtaaatactcataaaccaaaaccagttcattcccttcacaacactgtcctttaagctgaa 124  Q
    |||||||| ||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||   |||||||||||||    
T  44799806 cttaaattcctatgcagaactttatcaaggcttccatttggtagatactcataaaccaaaaccaattcattcccttcacaacaccaccctttaagctgaa 44799707  T
Q  125 ccagattcttgtgccgcaagcaacc 149  Q
    |||||||||||||||||||||||||    
T  44799706 ccagattcttgtgccgcaagcaacc 44799682  T

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