View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15795_high_6 (Length: 353)
Name: NF15795_high_6
Description: NF15795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15795_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 51113000 - 51112659
Alignment:
| Q |
11 |
cagagacaggaaaagaagggatgaggaggagcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataagg |
110 |
Q |
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| T |
51113000 |
cagaaacaggaaaagaagggaa-agaagccgcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataagg |
51112902 |
T |
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| Q |
111 |
acagcaccaccactgataaagcctctgaatatgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgc |
210 |
Q |
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| T |
51112901 |
acagcaccaccactgataaagcctctgaatatgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgc |
51112802 |
T |
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| Q |
211 |
tcaaaaagccagtgaccatgcccatgatgctgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112801 |
tcaaaaagccagtgaccatgcccatgatgctgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttct |
51112702 |
T |
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| Q |
311 |
gaaaagaccaaacattatgctgctgacgaaagctatgcagatg |
353 |
Q |
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| T |
51112701 |
gagaagaccaaacattatgctgctgacgaaagctatgcagatg |
51112659 |
T |
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