View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15795_high_7 (Length: 340)
Name: NF15795_high_7
Description: NF15795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15795_high_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 1402277 - 1402597
Alignment:
| Q |
11 |
caaagggcgtagaaatcttctacaagagctggtttcctgaaactgccaggccgaaagcagctgtgttttactgtcatggttatggagatacttccacctt |
110 |
Q |
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| T |
1402277 |
caaagggcatagaaatcttctacaagagctggtttcctgaaactgccaggccgaaagcagctgtgttttactgtcatggttatggagatacttccacctt |
1402376 |
T |
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| Q |
111 |
tttctttgaaggcatgtagtagctggtgttaagttctggttgctttgttttactagataagttacattgtcgattactgactcgattgactcgatcatat |
210 |
Q |
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| T |
1402377 |
tttctttgaaggtatgtagtagctggtgttaagttctggttgctttgttttactagataagttacattgtcgattac---------tgactcgatcatat |
1402467 |
T |
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| Q |
211 |
tgtgaagcttatttccaggaatagctagaaaattggcatgtgctggatatggagtttttgctatggattatccaggatttggtctttcagaaggtcttca |
310 |
Q |
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| T |
1402468 |
tgtgaaacttatttgcaggaatagctagaaaattggcatgtgatggatatggagtttttgctatggattatccaggatttggtctttcagaaggtcttca |
1402567 |
T |
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| Q |
311 |
ttgctatattcctagtttcgattctttagt |
340 |
Q |
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| T |
1402568 |
ttgctatattcctagtttcgattctttagt |
1402597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 221 - 328
Target Start/End: Original strand, 7086970 - 7087077
Alignment:
| Q |
221 |
atttccaggaatagctagaaaattggcatgtgctggatatggagtttttgctatggattatccaggatttggtctttcagaaggtcttcattgctatatt |
320 |
Q |
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| T |
7086970 |
atttgcaggaatagctagaaaacttgcatcatgtggatatggagtttttgctatggattatccaggatttggtctttcagaaggtcttcatggctatatt |
7087069 |
T |
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| Q |
321 |
cctagttt |
328 |
Q |
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| T |
7087070 |
actagttt |
7087077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 221 - 328
Target Start/End: Complemental strand, 8805458 - 8805351
Alignment:
| Q |
221 |
atttccaggaatagctagaaaattggcatgtgctggatatggagtttttgctatggattatccaggatttggtctttcagaaggtcttcattgctatatt |
320 |
Q |
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| T |
8805458 |
atttgcaggaatagctagaaaacttgcatcatgtggatatggagtttttgctatggattatccaggatttggtctttcagaaggtcttcatggctatatt |
8805359 |
T |
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| Q |
321 |
cctagttt |
328 |
Q |
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| T |
8805358 |
actagttt |
8805351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 7086643 - 7086707
Alignment:
| Q |
64 |
aaagcagctgtgttttactgtcatggttatggagatacttccacctttttctttgaaggcatgta |
128 |
Q |
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| T |
7086643 |
aaagcagcagtatttttctgtcatggatatggagacacttgcacttttttctttgaaggcatgta |
7086707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 8805783 - 8805719
Alignment:
| Q |
64 |
aaagcagctgtgttttactgtcatggttatggagatacttccacctttttctttgaaggcatgta |
128 |
Q |
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| T |
8805783 |
aaagcagcagtatttttctgtcatggatatggagacacttgcacttttttctttgaaggcatgta |
8805719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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