View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15795_low_2 (Length: 255)
Name: NF15795_low_2
Description: NF15795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15795_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 69 - 246
Target Start/End: Complemental strand, 26245694 - 26245517
Alignment:
| Q |
69 |
tacctgcataaaagtgtaacgctgtctgccaatagattcgttttgagcgatagaaaagtaagaaagtaaaggaaaatggccaatgtatgaagcatagcta |
168 |
Q |
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| T |
26245694 |
tacctgcataaaagtgtaacgctgtctaccaatagattcgttttgagcgatagaaaagtaagaaagtaaaggataatggccaatgtatgaagcatagcta |
26245595 |
T |
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| Q |
169 |
tcacgttgaatattcacagcccattcaaatctgttaatatcagcatgaccagttccaacatatttagcttgatgatgt |
246 |
Q |
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| T |
26245594 |
tcacgttgaatattcacagcccattcaaatctgttgatatcagcatgtccagttccaacgtatttagcttgaagatgt |
26245517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 5390822 - 5390992
Alignment:
| Q |
69 |
tacctgcataaaagtgtaacgctgtctgccaatagattcgttttgagcgatagaaaagtaagaaagtaaaggaaaatggccaatgtatgaagcatagcta |
168 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |||||||||||| |
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| T |
5390822 |
tacctgcataaaagtgtaacgctgtctaccaatagattcgttttgagcaatagaaaagtaagaaagtaaagggtaatggccaatatacgaagcatagcta |
5390921 |
T |
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| Q |
169 |
tcacgttgaatattcacagcccattcaaatctgttaatatcagcatgaccagttccaacatatttagcttg |
239 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
5390922 |
tcacgttgaatattcacagcccattcaaatctattgatatcagcatgaccagttccaacatatttagcttg |
5390992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 5395567 - 5395737
Alignment:
| Q |
69 |
tacctgcataaaagtgtaacgctgtctgccaatagattcgttttgagcgatagaaaagtaagaaagtaaaggaaaatggccaatgtatgaagcatagcta |
168 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| || |||||||||||| |
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| T |
5395567 |
tacctgcataaaagtgtaacgctgtctaccaatagattcattttgagcaatagaaaagtaagaaagtaaagggtaatggccaatatacgaagcatagcta |
5395666 |
T |
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| Q |
169 |
tcacgttgaatattcacagcccattcaaatctgttaatatcagcatgaccagttccaacatatttagcttg |
239 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5395667 |
tcacgttgaatattcacagcccattcaaatctgttgatatcagcatgaccagttccaacatatttagcttg |
5395737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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