View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15796_high_2 (Length: 473)
Name: NF15796_high_2
Description: NF15796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15796_high_2 |
 | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 30 - 450
Target Start/End: Original strand, 1962905 - 1963325
Alignment:
| Q |
30 |
acttccatttgctcaagttggataaggaaacttcatgcgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcggga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1962905 |
acttccatttgctcaagttggataaggaaacttcatgtgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcggga |
1963004 |
T |
|
| Q |
130 |
ttttcttgacctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaagaattccgtctttttgatggtgttctaattaatagc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1963005 |
ttttcttgacctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttcttattaatagc |
1963104 |
T |
|
| Q |
230 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963105 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagatgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
1963204 |
T |
|
| Q |
330 |
catctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963205 |
catctggtgatgatgctaataagtttgagtgtctgacatggttggacaaacaatgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
1963304 |
T |
|
| Q |
430 |
ttcgcaagaacaaattgatga |
450 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1963305 |
ttcgcaagaacaaattgatga |
1963325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 30 - 450
Target Start/End: Complemental strand, 2015524 - 2015104
Alignment:
| Q |
30 |
acttccatttgctcaagttggataaggaaacttcatgcgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcggga |
129 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
2015524 |
acttctatttgctcaagttagataaggaaacatcatgcgagtacagagatcttcctgggcctattcaaataccaggtagtgttccgattcatggtcggga |
2015425 |
T |
|
| Q |
130 |
ttttcttgacctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaagaattccgtctttttgatggtgttctaattaatagc |
229 |
Q |
| |
|
| || |||| ||||||||||||||||| |||||||||||||| | ||| |||||| |||||||| |||| ||||||||||||||| |||| |||||||| |
|
|
| T |
2015424 |
tctttttgagctagctcaagatagatccagtcaatcttacaaatacttactccaaggtgttgaaaaattgcgtctttttgatggtattcttattaatagt |
2015325 |
T |
|
| Q |
230 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
329 |
Q |
| |
|
||| | ||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2015324 |
ttcatagaaatcgaaaacggtcctatagaagcactgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
2015225 |
T |
|
| Q |
330 |
catctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
429 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||| ||||||| ||||| || |||||||| ||||| |
|
|
| T |
2015224 |
catctggtgatgatgctaataagtttgaatgtctggcatggttggacaaacaacggccttgttcagttctgtatgtgtctttcgggagtggtggaacact |
2015125 |
T |
|
| Q |
430 |
ttcgcaagaacaaattgatga |
450 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
2015124 |
ttcgcaagaacaaattaatga |
2015104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 450
Target Start/End: Complemental strand, 2018907 - 2018487
Alignment:
| Q |
30 |
acttccatttgctcaagttggataaggaaacttcatgcgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcggga |
129 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||| |||||| |||||||| ||||||||||||||||||||| ||||| || |||||||||| ||| |
|
|
| T |
2018907 |
acttctatttgctcaagttgaataaggaaacatcatgtcagtacaaagatcttctagagcctattcaaataccaggctgtgtaccaattcatggtcagga |
2018808 |
T |
|
| Q |
130 |
ttttcttgacctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaagaattccgtctttttgatggtgttctaattaatagc |
229 |
Q |
| |
|
| || |||||| |||||||||||||||||||||||||||||| ||||| || || |||||||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
2018807 |
tcttgttgaccaagctcaagatagatcaagtcaatcttacaaattcttacttgaacgtgttgaaaaattccgtctttttgatggtattcttattaatagc |
2018708 |
T |
|
| Q |
230 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
329 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| | ||||| || |||||| |||| | ||| |||||||||||||| ||||||||||| | ||| | |
|
|
| T |
2018707 |
ttcctagaaattgaaaaaggtcctatagaagcactcacagaagacagaagtggcaaccctgatgtttatgctgttggaccaattatccaaacgccaacca |
2018608 |
T |
|
| Q |
330 |
catctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
429 |
Q |
| |
|
||| |||||||||| |||| ||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2018607 |
aatcgggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacact |
2018508 |
T |
|
| Q |
430 |
ttcgcaagaacaaattgatga |
450 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
2018507 |
ttcgcaagaacaaattaatga |
2018487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 31 - 446
Target Start/End: Complemental strand, 2012124 - 2011709
Alignment:
| Q |
31 |
cttccatttgctcaagttggataaggaaacttcatgcgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggat |
130 |
Q |
| |
|
|||| |||||| ||||||||| ||||||| |||| |||||||||||||| ||||||||||| || |||| || || || || | ||||| ||||| |
|
|
| T |
2012124 |
cttctatttgcctaagttggatgaggaaacaacatgtgagtacagagatctcccagagcctatcaaagtaccgggctgcgtaccactccatggcagggat |
2012025 |
T |
|
| Q |
131 |
tttcttgacc-tagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaagaattccgtctttttgatggtgttctaattaatagc |
229 |
Q |
| |
|
| ||||||| ||| ||||||||||||||||||| ||||||| | ||| || ||| |||| || || || || |||||||||||| |||||||| |
|
|
| T |
2012024 |
ct-cttgaccatagttcaagatagatcaagtcaagcttacaaatacttccttcaacatgttaaaagtttaagttttgctgatggtgttcttgttaatagc |
2011926 |
T |
|
| Q |
230 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
329 |
Q |
| |
|
||| | ||||| |||| ||| |||||| | ||| ||||||| |||||||||| |||| | ||| ||| ||||||||||||| ||||| ||| ||||| |
|
|
| T |
2011925 |
ttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcatccagacagtaacag |
2011826 |
T |
|
| Q |
330 |
catctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
429 |
Q |
| |
|
|||| ||||||||||||| || ||||||||| |||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
2011825 |
gttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacact |
2011726 |
T |
|
| Q |
430 |
ttcgcaagaacaaattg |
446 |
Q |
| |
|
||| || |||||||||| |
|
|
| T |
2011725 |
ttcacacgaacaaattg |
2011709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 31 - 446
Target Start/End: Complemental strand, 2008509 - 2008094
Alignment:
| Q |
31 |
cttccatttgctcaagttggataaggaaacttcatgcgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggat |
130 |
Q |
| |
|
|||| |||||| ||| ||||| ||||||| ||||| ||||| |||||| | | ||||||||| |||||||||||||||| || | ||||| ||||| |
|
|
| T |
2008509 |
cttctatttgcctaagctggatgaggaaacatcatgtgagtatagagatatactagagcctataaaaataccaggttgtgtaccactccatggcagggat |
2008410 |
T |
|
| Q |
131 |
tttcttgacc-tagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaagaattccgtctttttgatggtgttctaattaatagc |
229 |
Q |
| |
|
|| ||||| | ||||||||||||||||||||||| ||||||| ||| |||| || |||| || || || | |||||||||||| |||||||| |
|
|
| T |
2008409 |
tt-cttgagcatagctcaagatagatcaagtcaagcttacaaacacttcctcccatttgttaaacttttaagttctgctgatggtgttcttgttaatagc |
2008311 |
T |
|
| Q |
230 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
329 |
Q |
| |
|
||||| ||||| || | ||||||| || ||||||| ||| || ||| |||| |||| || |||||| |||||||||| |||||| ||||| ||||| |
|
|
| T |
2008310 |
ttcctagaaatagagatgggtcctctaagtgcaatgaaagaggagggaggtgacaaccctccagtgtatcctgttggacctattatcgaaacagaaacaa |
2008211 |
T |
|
| Q |
330 |
catctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
429 |
Q |
| |
|
||||||||||||||||||| || ||||||||| |||||||| ||||| | |||||||| ||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
2008210 |
aatctggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcaaccttgttcggttttgtatgtatcttttgggagtggaggtacact |
2008111 |
T |
|
| Q |
430 |
ttcgcaagaacaaattg |
446 |
Q |
| |
|
||| || || ||||||| |
|
|
| T |
2008110 |
ttcacaggagcaaattg |
2008094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 207 - 375
Target Start/End: Original strand, 2432971 - 2433139
Alignment:
| Q |
207 |
ttgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgg |
306 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||| |||| |||||||||| ||||| ||||||| |||||||||||||| | |||||||||| ||||||| |
|
|
| T |
2432971 |
ttgatggtgttcttgttaatagcttcttagaaatggaaaggggtcctataaaagcactgacagatgaaggaagtgaaaatcctcttgtgtatcctgttgg |
2433070 |
T |
|
| Q |
307 |
acccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgatatggttgga |
375 |
Q |
| |
|
|||||| ||||| ||| |||||| |||| ||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
2433071 |
acccatcatccagacaataacaagttctgacgatgatgctaatatgttggagtgtctgtcatggttgga |
2433139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 48 - 446
Target Start/End: Original strand, 1968523 - 1968921
Alignment:
| Q |
48 |
tggataaggaaacttcatgcgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcgggattttcttgacc-tagctc |
146 |
Q |
| |
|
||||| ||||||| ||||| ||||| |||||| | ||||||||||| |||||||||| ||||| || || ||||| ||||| | ||||| | |||||| |
|
|
| T |
1968523 |
tggatgaggaaacatcatgtgagtatagagatataccagagcctataaaaataccaggctgtgtaccaatccatggcagggatct-cttgagcgtagctc |
1968621 |
T |
|
| Q |
147 |
aagatagatcaagtcaatcttacaagttctttctccaatgtgttgaagaattccgtctttttgatggtgttctaattaatagcttcctggaaattgaaaa |
246 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||| | | || || || || || |||||||||| | ||||||||||||||||| | || | |
|
|
| T |
1968622 |
aagatagatcaagtcaagtttacaaacacttcctcccactttttaaacttttaagttttgctgatggtgtttttgttaatagcttcctggaattggagat |
1968721 |
T |
|
| Q |
247 |
gggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgct |
346 |
Q |
| |
|
||| |||||| ||||||| ||| || |||||||| |||| || |||||| |||||||||| |||||||||||| ||||| || |||||||||||| |
|
|
| T |
1968722 |
gggacctataagtgcaatgaaagaggagggaagtgacaaccctccagtgtatcctgttggaccaattatccaaacagaaacaagttcaggtgatgatgct |
1968821 |
T |
|
| Q |
347 |
aataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacactttcgcaagaacaaattg |
446 |
Q |
| |
|
||| || ||||||||| |||||||| ||||| | ||||| |||||||||||||| ||||| || |||||||| |||||||| || |||||||||| |
|
|
| T |
1968822 |
aatggcttggagtgtctggcctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattg |
1968921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 208 - 446
Target Start/End: Complemental strand, 2004952 - 2004714
Alignment:
| Q |
208 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
307 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| || | |||||||||| ||||||| ||| |||||||||||||||| || ||||||| |||||||| |
|
|
| T |
2004952 |
tgatggtgttcttgttaatagcttcctagaaatggagatgggtcctataagtgcaatgaaagatgaaggaagtgaaaaccctcctgtgtatcctgttgga |
2004853 |
T |
|
| Q |
308 |
cccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgttt |
407 |
Q |
| |
|
||||| |||| || || || || ||||||| | | || ||| || ||||| | ||||||||| ||||| | |||||||||||||||||||| | |
|
|
| T |
2004852 |
cccatcatcccgacgatagaaagttccggtgatgctaatcatgggttggaatgtctaacatggttggataaacagcaaccttgttcagttttgtatgtgt |
2004753 |
T |
|
| Q |
408 |
cttttggtagtggtggcacactttcgcaagaacaaattg |
446 |
Q |
| |
|
||||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
2004752 |
cttttgggagtggcggtacactttcacaagaacaaattg |
2004714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 208 - 446
Target Start/End: Original strand, 1964747 - 1964985
Alignment:
| Q |
208 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
307 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| |||| ||| |||||| ||||| |||||| |||||||||| |||| | ||||||| |||||||| |
|
|
| T |
1964747 |
tgatggtgttcttgttaatagcttcttagaaatggaaatgggacctataaaagcaccgacagaggaaggaagtggcaacccttctgtgtatcctgttgga |
1964846 |
T |
|
| Q |
308 |
cccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgttt |
407 |
Q |
| |
|
||||| ||| | ||| ||||| |||| |||||||||| || ||||||||| |||||| |||||||||| ||||||||||||||||||| | |
|
|
| T |
1964847 |
cccatcatcgatacagtaacatgttctgaccgtgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgt |
1964946 |
T |
|
| Q |
408 |
cttttggtagtggtggcacactttcgcaagaacaaattg |
446 |
Q |
| |
|
|||| || |||||||| |||||||| || |||||||||| |
|
|
| T |
1964947 |
ctttcgggagtggtggtacactttcacacgaacaaattg |
1964985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 30 - 450
Target Start/End: Original strand, 5902084 - 5902498
Alignment:
| Q |
30 |
acttccatttgctcaagttggataaggaaacttcatgcgagtacagagatcttccagagcctattcaaataccaggttgtgtcccgattcatggtcggga |
129 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||||| |||||||||||||| ||||| ||||||||| |||||||||||| || |||| ||||||||| |
|
|
| T |
5902084 |
acttctatttgctcaaattggataaggaaacatcatgtgagtacagagatctgccagaacctattcaagcaccaggttgtgtaccaattcgtggtcggga |
5902183 |
T |
|
| Q |
130 |
ttttcttgacctagctcaagatagatcaagtcaatcttacaagttctttctccaatgtgttgaagaattccgtctttttgatggtgttctaattaatagc |
229 |
Q |
| |
|
| | ||| || ||||||||||||||| || ||||||||||| ||||| |||||| || || || |||| || | ||||||| | || ||||||||| |
|
|
| T |
5902184 |
tctcgttgcccaagctcaagatagatcgagccaatcttacaaattcttactccaacgtattaaaagattctgttctgttgatggcatacttattaatagc |
5902283 |
T |
|
| Q |
230 |
ttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaa |
329 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||| | |||||| || |||||||||||||||||||| |||| |
|
|
| T |
5902284 |
ttcctggaaattgaaaaaggtcctatagaagcactgacagaagaaggaagtggtaaccctgctgtgtaccctattggacccattatccaaacaagaacag |
5902383 |
T |
|
| Q |
330 |
catctggtgatgatgctaataagtttgagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacact |
429 |
Q |
| |
|
||||||| || ||| || | |||||||||| |||||| | ||||||| ||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
5902384 |
aatctggtaataatggta------tggagtgtctgacatggttacataaacaacaaccttgttcagttttgtatgtttcttttggaagtggtggtgcact |
5902477 |
T |
|
| Q |
430 |
ttcgcaagaacaaattgatga |
450 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
5902478 |
ttcacaagaacaaattgatga |
5902498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 450
Target Start/End: Original strand, 5905888 - 5905982
Alignment:
| Q |
356 |
gagtgtctgatatggttggacaaacaacgtccttgttcagttttgtatgtttcttttggtagtggtggcacactttcgcaagaacaaattgatga |
450 |
Q |
| |
|
|||||| ||| |||||| || ||||| | ||||||||||||||||||||||||||||| || ||||| ||||||| |||||||||| |||||| |
|
|
| T |
5905888 |
gagtgtttgacatggttagataaacagcagccttgttcagttttgtatgtttcttttggaagcggtggtgcactttcacaagaacaaactgatga |
5905982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 432
Target Start/End: Original strand, 22055 - 22096
Alignment:
| Q |
391 |
ttcagttttgtatgtttcttttggtagtggtggcacactttc |
432 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
22055 |
ttcagttttgtatgtttcttttggaagtggtggaacactttc |
22096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Original strand, 2805 - 2842
Alignment:
| Q |
395 |
gttttgtatgtttcttttggtagtggtggcacactttc |
432 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
2805 |
gttttgtatgtttcttttggaagtggtggaacactttc |
2842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Original strand, 57348 - 57385
Alignment:
| Q |
395 |
gttttgtatgtttcttttggtagtggtggcacactttc |
432 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
57348 |
gttttgtatgtttcttttggaagtggtggaacactttc |
57385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 15496 - 15459
Alignment:
| Q |
395 |
gttttgtatgtttcttttggtagtggtggcacactttc |
432 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
15496 |
gttttgtatgtttcttttggaagtggtggaacactttc |
15459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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