View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15796_high_4 (Length: 463)
Name: NF15796_high_4
Description: NF15796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15796_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 30 - 378
Target Start/End: Original strand, 53679263 - 53679605
Alignment:
| Q |
30 |
gaaccaaactgttattaaactaaactggtttataaatgttcagactgaaccatatgaaaaggctcacgtccaatgagatggacatcatcattaacaagaa |
129 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || || | | || || | | |||||||||| |
|
|
| T |
53679263 |
gaaccaaactgttattgaactaaactggtttataaatgttcagactgaaccatatgaaaagg-tctggtt--actaactgaac-tgtt--ttaacaagaa |
53679356 |
T |
|
| Q |
130 |
gtgaaattgaaccagaatataactagcttaaaaacagaactgaaacatgacatatttaaaacgttaaacgtggtgaacaaaattgaaactttttaccaat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
53679357 |
ctgaaattgaaccagaatataactagcttaaaaacaaaactgaaacataacatatttaaaacgttaaacatggtgaacaaaattgaaattttttaccaat |
53679456 |
T |
|
| Q |
230 |
ctttcaatcaaacaattcaagaatcatgaagggagttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53679457 |
ctttcaatcaaacaattcaagaatcatgaagggagttgattaagcatgtaaaatcaattcaattaggttctatttctgatctaaatggatggattttcaa |
53679556 |
T |
|
| Q |
330 |
gaaagtcaaacgaaagtaagaaaggtgattcaatgttgattaagcaggt |
378 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53679557 |
gaaaatcaaacgaaagtaagaaaggtgattcggtgttgattaagcaggt |
53679605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University