View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15796_high_5 (Length: 328)
Name: NF15796_high_5
Description: NF15796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15796_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 46681296 - 46681614
Alignment:
| Q |
1 |
aaactacctccaaacaaacgatacaaactagctatctactaacagtaactttgaattgcaattataacacacattcatataaatatgcagaagggtcaat |
100 |
Q |
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| T |
46681296 |
aaactacctccaaacaaacgatacaaactagctatctactaacagtaactttgaattgtaattataacacacattcatataaatatgcagaagggttaat |
46681395 |
T |
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| Q |
101 |
ttatgatataaccacatcaacatatgcatttgtaacaggatgtgaatggattaagcattcataatggacnnnnnnnnnncagaggaagaagataaagatg |
200 |
Q |
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| T |
46681396 |
ttatgatataaccacatcaacatatgcatttgtaacaggatgtgaatggattaagcattcataatgtccaaaaaaaaaacagaggaagaagataaagatg |
46681495 |
T |
|
| Q |
201 |
caattagacgtaagatagtatatatgaaaactggtaaataatctatgaacatgcatgagaagttatacacaaaattcattgtaactcaaatagatttgat |
300 |
Q |
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| T |
46681496 |
caattagatgtaagatagtatatatgaaaactgataaataatctatgaacatgcatgagaagttatacacaaaattcattgtaactcaaatagatttgat |
46681595 |
T |
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| Q |
301 |
tttccaacctcttcatctc |
319 |
Q |
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| T |
46681596 |
tttccaacctcttcatctc |
46681614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 318
Target Start/End: Original strand, 46687817 - 46687923
Alignment:
| Q |
212 |
aagatagtatatatgaaaactggtaaataatctatgaacatgcatgagaagttatacacaaaattcattgtaactcaaatagatttgattttccaacctc |
311 |
Q |
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| T |
46687817 |
aagataatatgtatgataactgatatataatttacaaacatgcatgataagttatgcacaaaattgactgtaactcaaatagatttgattttctgacctc |
46687916 |
T |
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| Q |
312 |
ttcatct |
318 |
Q |
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|||||| |
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| T |
46687917 |
atcatct |
46687923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 304
Target Start/End: Original strand, 46704741 - 46704832
Alignment:
| Q |
216 |
tagtatatatgaaaactggtaaataatctatgaa---catgcatgagaagttatacacaaaattcattgtaactcaaatagatttgattttc |
304 |
Q |
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| T |
46704741 |
tagtatgtgtgataactgataaataatctataaaaaacatgcatgataagctatacacaaaatttactgtaactcaagtagatttgattttc |
46704832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 46696509 - 46696548
Alignment:
| Q |
1 |
aaactacctccaaacaaacgatacaaactagctatctact |
40 |
Q |
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| T |
46696509 |
aaactacctccaaacaaacgatacaagctagctatctact |
46696548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 46686368 - 46686431
Alignment:
| Q |
51 |
ttgaattgcaattataacacacat--tcatataaatatgcagaagggtcaatttatgatataac |
112 |
Q |
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||||||||||||| ||||||| || ||||| |||||||||||||| ||||| ||| ||||||| |
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| T |
46686368 |
ttgaattgcaattctaacacatatggtcatagaaatatgcagaaggatcaatatataatataac |
46686431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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