View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15796_high_6 (Length: 326)

Name: NF15796_high_6
Description: NF15796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15796_high_6
NF15796_high_6
[»] chr7 (5 HSPs)
chr7 (16-208)||(35247439-35247631)
chr7 (19-114)||(35239222-35239317)
chr7 (273-325)||(35247309-35247361)
chr7 (156-203)||(35239145-35239192)
chr7 (273-325)||(35238691-35238743)
[»] chr4 (1 HSPs)
chr4 (163-201)||(15034207-15034245)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 35247631 - 35247439
Alignment:
Q  16 gacaagaacaaagaaaaagagaatgattatttcttagatgctaatgaagatgaaactgatattgaagctgttaactacgatagtgacagtagtaataata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35247631 gacaagaacaaagaaaaagagaatgattatttcttagatgctaatgaagatgaaactgatattgaagctgttaactacgatagtgacagtagtaataata 35247532  T
Q  116 atgatgacgaggacgacgatgatcgcattgctactcatcgacctgaatctttcacttctcaacaatggcctcaaagttacaagtatgtcacca 208  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35247531 atgatgacgacgacgaagatgatcgcattgctactcatcgacctgaatctttcacttctcaacaatggcctcaaagttacaagtatgtcacca 35247439  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 35239317 - 35239222
Alignment:
Q  19 aagaacaaagaaaaagagaatgattatttcttagatgctaatgaagatgaaactgatattgaagctgttaactacgatagtgacagtagtaataat 114  Q
    ||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || |||||||||||||||||||||||||||||||| ||||||    
T  35239317 aagaacaaagaaaaagagaatgaatattttttggatgcaaacgaagatgaaaccgacattgaagctgttaactacgatagtgacagtagcaataat 35239222  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 35247361 - 35247309
Alignment:
Q  273 gatagtgaggctcttgatccattgacaattgcggctgcaccaaatattggatc 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35247361 gatagtgaggctcttgatccattgacaattgcggctgcaccaaatattggatc 35247309  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 35239192 - 35239145
Alignment:
Q  156 acctgaatctttcacttctcaacaatggcctcaaagttacaagtatgt 203  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35239192 acctgaatctttcacttctcaacaatggcctcaaacttacaagtatgt 35239145  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 35238743 - 35238691
Alignment:
Q  273 gatagtgaggctcttgatccattgacaattgcggctgcaccaaatattggatc 325  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||| |||||||    
T  35238743 gatagtgaggctattgatcctttgacaattgctgctgcaccaaatcttggatc 35238691  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 15034207 - 15034245
Alignment:
Q  163 tctttcacttctcaacaatggcctcaaagttacaagtat 201  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  15034207 tctttcacttctcagcaatggcctcaaagctacaagtat 15034245  T

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