View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15796_high_9 (Length: 308)
Name: NF15796_high_9
Description: NF15796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15796_high_9 |
 | |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 18342689 - 18342984
Alignment:
| Q |
1 |
ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342689 |
ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttc |
18342788 |
T |
|
| Q |
101 |
tttatcaatgagaaccgccgcattatcaccatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccccgatcact |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
18342789 |
tttatcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcact |
18342888 |
T |
|
| Q |
201 |
tcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342889 |
tcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
18342984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 48288629 - 48288862
Alignment:
| Q |
1 |
ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaat----tcgagttccttttggatttc |
96 |
Q |
| |
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|||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| ||||| |
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| T |
48288629 |
ataatacctcggatgttaatgaaactatttaagtgaaatttacctgtctcaattctcgggctattgcaaaaaaaaaaaaatcgagttccttttgaatttc |
48288728 |
T |
|
| Q |
97 |
cttctttatcaatgagaaccgccgcattatcaccatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccccgat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||||||||||||||||| ||| |||| | || || |
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| T |
48288729 |
cttctttatcaatgagaaccgccgcattatcatcatactttattattatatcatcaccacgttttagttctttacaa----gtataatt-gactcctaat |
48288823 |
T |
|
| Q |
197 |
cacttcagatctttctaaagatgaatttggtactgcttt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
48288824 |
cacttcagatctttctaaagatgaatttgatactccttt |
48288862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 36 - 296
Target Start/End: Original strand, 36840497 - 36840757
Alignment:
| Q |
36 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcaccatact |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36840497 |
aaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatcatact |
36840596 |
T |
|
| Q |
136 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccccgatcacttcagatctttctaaagatgaatttggtactgcttt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840597 |
ttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttt |
36840696 |
T |
|
| Q |
236 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840697 |
tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
36840757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 46 - 296
Target Start/End: Complemental strand, 164630 - 164380
Alignment:
| Q |
46 |
gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcaccatactttattattat |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
164630 |
gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat |
164531 |
T |
|
| Q |
146 |
accattactacgttttagttctttacaagtacgtacaattacagccccgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
164530 |
accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca |
164431 |
T |
|
| Q |
246 |
gcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
164430 |
tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
164380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 277417 - 277629
Alignment:
| Q |
1 |
ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttc |
100 |
Q |
| |
|
||||||| || || ||||||||||||||||| || ||||| || | ||||||||| ||| || ||| ||||| ||||||||||||||| || |||| |
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|
| T |
277417 |
ataatacttcaggagctaatgaaactattttggtaaaattcaattctctcaattcctcggcaatcgcgccaaaaactcgagttccttttgggttgccttt |
277516 |
T |
|
| Q |
101 |
tttatcaatgagaaccgccgcattatcaccatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccccgatcact |
200 |
Q |
| |
|
|| |||||| | |||||| ||||| ||| |||| ||||||||||| | | ||| | ||||||||| ||||||||||||||||| | || ||| |
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| T |
277517 |
ttgatcaattataaccgcagcattgtcatcatagcggattattataccgtcttcgcatttgaattctttacatgtacgtacaattacagctcgaattact |
277616 |
T |
|
| Q |
201 |
tcagatctttcta |
213 |
Q |
| |
|
|| |||||||||| |
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|
| T |
277617 |
tcggatctttcta |
277629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 46 - 296
Target Start/End: Original strand, 14249096 - 14249346
Alignment:
| Q |
46 |
gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcaccatactttattattat |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
14249096 |
gtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatcatactttattattat |
14249195 |
T |
|
| Q |
146 |
accattactacgttttagttctttacaagtacgtacaattacagccccgatcacttcagatctttctaaagatgaatttggtactgcttttttgattaca |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14249196 |
accattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattaca |
14249295 |
T |
|
| Q |
246 |
gcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14249296 |
tcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
14249346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 1028 - 733
Alignment:
| Q |
1 |
ataatacctcgggtgctaatgaaactattttagtgaaatttaactgtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||| |
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|
| T |
1028 |
ataatacctcgggagctaatgaaactattttagtgaaatttaactgtctcaattcccgggcgatcgcaccaaaaattcgagttccttttggatttccttc |
929 |
T |
|
| Q |
101 |
tttatcaatgagaaccgccgcattatcaccatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccccgatcact |
200 |
Q |
| |
|
|| |||||||| ||| || ||||| ||| |||| |||||| || || || ||||| ||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
928 |
ttgatcaatgacaacggcagcattgtcatcatatcgtattatcatcccgttgtcgcgtttgagttctttacaagtacgtacaattacagctctgatcact |
829 |
T |
|
| Q |
201 |
tcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
296 |
Q |
| |
|
|| |||||||||| || || |||||||||||||| ||||| |||||||||| || ||||||||||| |||||| || |||||||||||||||||| |
|
|
| T |
828 |
tctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataacgtcaccaatatgagcatatcggcgattactagctcctatg |
733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 189 - 296
Target Start/End: Original strand, 46699127 - 46699234
Alignment:
| Q |
189 |
gccccgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
288 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
|
| Q |
289 |
ctcctatg |
296 |
Q |
| |
|
|||||||| |
|
|
| T |
46699227 |
ctcctatg |
46699234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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