View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15797_high_1 (Length: 608)
Name: NF15797_high_1
Description: NF15797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15797_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 18 - 596
Target Start/End: Original strand, 5918742 - 5919320
Alignment:
| Q |
18 |
attatgaagcaagttcaagaaggctagaagtgagattgagtaaacatggaaattcaaagccattggatccattgttatggcacagaattgacatatctaa |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5918742 |
attatgaagcaagttcaagaaggttagaagtgagattgagtaaacatggaaattcaaagccattggatccattgttatggcacaaaattgacatatctaa |
5918841 |
T |
|
| Q |
118 |
tgtcttgaaggaggaagaaatgtttgttggttttagtcatgtgaaggggaataatgcttttctatattcatggagctttgttatgaggaattttccacca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5918842 |
tgtcttgaaggaggaagaaatgtttgttggttttagtcatgtgaaggggaataatgcttttctatattcatggagctttgttatgaggaattttccacca |
5918941 |
T |
|
| Q |
218 |
cattcaatgcattcagagccacttgatcctaatgtttctgttaaaaagagtgaaacttcaatggttgttaaaccaaaggaaaaggcaaagaagaatgatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5918942 |
cattcaatgcattcagagccacttgatcctaatgtttctgttaaaaagagtgaaacttcaatggttgttaaaccaaaggaaaaggcaaagaagaatgatt |
5919041 |
T |
|
| Q |
318 |
gtgttttaagagttcttgctgcaatgatatttggtactggttgtggagcattgacagcattcactgtgctttatttgtggacaatctttggcaataaacg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5919042 |
gtgttttaagagttcttgctgcaatgatatttggcactggttgtggagcattgacagcattcactgtgctttatttgtggacaatctttggcaataaacg |
5919141 |
T |
|
| Q |
418 |
tggtgcagtggttccagaaggatgttctatgcagcctttagatgttgagtataggaaagttaaaattgttgtagatagtaaaaccattggagatggtaat |
517 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5919142 |
tggtgcagttgttccagaaggatgttctatgcaacctttagatgttgagtatagaaaagttaaaattgttgtagatagtaaaaccattggagatggtaat |
5919241 |
T |
|
| Q |
518 |
aagtagatcttcttgagataactatctggtttgaaacttgtttgtaaatctagtaggttttgatctgttgtatgatgat |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5919242 |
aagtagatcttcttgagataactatctggtttgaaacttgtttgtaaatctagtaggttttgatctgttgtatgatgat |
5919320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 57 - 481
Target Start/End: Complemental strand, 3028755 - 3028331
Alignment:
| Q |
57 |
gtaaacatggaaattcaaagccattggatccattgttatggcacagaattgacatatctaatgtcttgaaggaggaagaaatgtttgttggttttagtca |
156 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||||||| | ||||||| | ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3028755 |
gtaaaaatggaaattcaaagccattgaatttattgttatggcataaaattgacgtctctaatgtcttgaaggatgaagaaatgtttgttggttttagtca |
3028656 |
T |
|
| Q |
157 |
tgtgaaggggaataatgcttttcta-tattcatggagctttgttatgaggaattttccaccacattcaatgcattcagagccacttgatcctaatgtttc |
255 |
Q |
| |
|
||||||||||| |||| |||| | ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | |||| | |
|
|
| T |
3028655 |
tgtgaaggggac-aatgttttttttgtattcgtggagctttgttataaggcattttccaccacattcaatgcattcagagccacttgatccaattgttcc |
3028557 |
T |
|
| Q |
256 |
tgttaaaaagagtgaaacttcaatggttgttaaaccaaaggaaaaggcaaagaagaatgattgtgttttaagagttcttgctgcaatgatatttggtact |
355 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3028556 |
tgttaaaaagagtaagaccccaatggttgttaaaccaaaggaaaaggcaaagaagaatggtggtgttttaagagttcttgctgcaatgatatttgatact |
3028457 |
T |
|
| Q |
356 |
ggttgtggagcattgacagcattcactgtgctttatttgtggacaatctttggcaataaacgtggtgcagtggttccagaaggatgttctatgcagcctt |
455 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| | || |
|
|
| T |
3028456 |
ggttgtggagcattgacagcatttattgtgctttatttgtggacaatatttgccaataaacgttgtgcagtggttccagaaggatgttctatgcaacttt |
3028357 |
T |
|
| Q |
456 |
tagatgttgagtataggaaagttaaa |
481 |
Q |
| |
|
|| ||||| || |||||||||||||| |
|
|
| T |
3028356 |
tacatgtttagcataggaaagttaaa |
3028331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 313 - 418
Target Start/End: Original strand, 24105137 - 24105242
Alignment:
| Q |
313 |
tgattgtgttttaagagttcttgctgcaatgatatttggtactggttgtggagcattgacagcattcactgtgctttatttgtggacaatctttggcaat |
412 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||| | || ||||| ||||||||||||||||| || ||||| ||| |
|
|
| T |
24105137 |
tgattgtgttttaagaattcttgctgcaatgatatttggttctggatgtggagcattggcggcgttcaccgtgctttatttgtggacgatgtttggtaat |
24105236 |
T |
|
| Q |
413 |
aaacgt |
418 |
Q |
| |
|
| |||| |
|
|
| T |
24105237 |
agacgt |
24105242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 10524182 - 10524115
Alignment:
| Q |
227 |
cattcagagccacttgatcctaatgtttctgttaaaaagagtgaaacttcaatggttgttaaaccaaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10524182 |
cattcagagccacttgatcctaatgtttctgttaaaaagagtgaaacttcaatggttgttaaaccaaa |
10524115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University