View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15797_high_4 (Length: 298)

Name: NF15797_high_4
Description: NF15797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15797_high_4
NF15797_high_4
[»] chr5 (1 HSPs)
chr5 (1-288)||(7281321-7281603)
[»] chr6 (1 HSPs)
chr6 (144-198)||(2516314-2516368)
[»] chr4 (1 HSPs)
chr4 (144-186)||(21402216-21402258)
[»] chr1 (1 HSPs)
chr1 (148-198)||(48038529-48038579)
[»] chr3 (1 HSPs)
chr3 (144-221)||(20402473-20402550)


Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 7281321 - 7281603
Alignment:
Q  1 gtatcattgaaataaacttctgtgttttacctccacacatcttgtgctagataaagttctctttttgtggtaatatattccattttaacttcttcnnnnn 100  Q
    ||||||||||||||||||||| |||||||||||  |||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||          
T  7281321 gtatcattgaaataaacttctatgttttacctcggcacaccttgtgttaggtaaaattctctttttgtggtaatatattccattttaacttcttaaaaaa 7281420  T
Q  101 nntatattaaggactacatggagtactcaacgtattccttaggaaatttattaatattgatgaagccattatatataaggattttaggagtggtggttta 200  Q
      |||||||||||||     |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7281421 aatatattaaggact-----gagtactcaacgtatttcttaggaaatttattaatattgatgaagccattatatataaggattttaggagtggtgattta 7281515  T
Q  201 tgtgccgcataaaaaattccattagattggggacggcccacattagaatttgatgagtttaaataaaataatagtttgcaagcctttg 288  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  7281516 tatgccgcataaaaaattccaatagattggggacggcccacattagagtttgatgagtttaaagaaaatgatagtttgcaagcctttg 7281603  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 2516314 - 2516368
Alignment:
Q  144 aaatttattaatattgatgaagccattatatataaggattttaggagtggtggtt 198  Q
    |||||||||||||||||| | | ||||||| |||| |||| ||||||||||||||    
T  2516314 aaatttattaatattgataatgtcattatagataaagattctaggagtggtggtt 2516368  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 21402216 - 21402258
Alignment:
Q  144 aaatttattaatattgatgaagccattatatataaggatttta 186  Q
    |||||||||||||||||||||| ||||||| |||| |||||||    
T  21402216 aaatttattaatattgatgaagtcattataaataaagatttta 21402258  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 48038529 - 48038579
Alignment:
Q  148 ttattaatattgatgaagccattatatataaggattttaggagtggtggtt 198  Q
    |||||||| ||||||| | |||||||||||| ||||||| |||||||||||    
T  48038529 ttattaatgttgatgaggtcattatatataaagattttatgagtggtggtt 48038579  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 20402473 - 20402550
Alignment:
Q  144 aaatttattaatattgatgaagccattatatataaggattttaggagtggtggtttatgtgccgcataaaaaattcca 221  Q
    |||||||||||||||| ||| | ||||||| |||| |||| ||||| |||||||| | |||  |||||| ||||||||    
T  20402473 aaatttattaatattggtgaggtcattatacataaagattctaggactggtggttcacgtgttgcataacaaattcca 20402550  T

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