View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15797_low_2 (Length: 601)

Name: NF15797_low_2
Description: NF15797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15797_low_2
NF15797_low_2
[»] chr8 (10 HSPs)
chr8 (17-588)||(5198424-5198991)
chr8 (17-335)||(5195095-5195413)
chr8 (17-291)||(5177659-5177931)
chr8 (17-230)||(6231611-6231830)
chr8 (17-230)||(5185101-5185320)
chr8 (17-230)||(1795686-1795908)
chr8 (350-568)||(5177972-5178186)
chr8 (19-380)||(5207095-5207463)
chr8 (192-274)||(33861483-33861565)
chr8 (17-102)||(5171561-5171646)
[»] chr7 (4 HSPs)
chr7 (17-230)||(5178793-5179012)
chr7 (17-127)||(8306732-8306842)
chr7 (17-127)||(8551751-8551861)
chr7 (278-328)||(5179026-5179077)
[»] chr2 (8 HSPs)
chr2 (192-285)||(35611435-35611528)
chr2 (192-285)||(27194264-27194357)
chr2 (192-285)||(27844078-27844171)
chr2 (192-285)||(39441417-39441509)
chr2 (335-381)||(35611522-35611568)
chr2 (335-380)||(27194351-27194395)
chr2 (335-380)||(27844165-27844209)
chr2 (335-380)||(39441378-39441423)
[»] chr6 (8 HSPs)
chr6 (196-285)||(16015370-16015459)
chr6 (17-119)||(1187171-1187273)
chr6 (17-102)||(1192877-1192962)
chr6 (37-102)||(896776-896841)
chr6 (17-102)||(1181949-1182034)
chr6 (17-116)||(1197404-1197503)
chr6 (335-380)||(16015331-16015376)
chr6 (335-380)||(18344638-18344682)
[»] scaffold0356 (2 HSPs)
scaffold0356 (191-274)||(15393-15476)
scaffold0356 (335-380)||(15343-15388)
[»] chr4 (4 HSPs)
chr4 (192-274)||(31921507-31921589)
chr4 (17-102)||(10203351-10203436)
chr4 (20-116)||(49611873-49611969)
chr4 (335-380)||(617886-617930)
[»] chr3 (1 HSPs)
chr3 (192-274)||(41763465-41763547)
[»] chr1 (3 HSPs)
chr1 (194-274)||(2330961-2331041)
chr1 (335-380)||(2331046-2331091)
chr1 (335-380)||(48233891-48233935)
[»] chr5 (2 HSPs)
chr5 (192-285)||(14191144-14191240)
chr5 (335-381)||(14191104-14191150)


Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 588
Target Start/End: Complemental strand, 5198991 - 5198424
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaatattggtttcaagac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  5198991 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgataatattgatttcaagac 5198892  T
Q  117 catgctagaattgttgcccgttgatgaaaaaattaactttatgttagaattttaatgttgctgtcatcaactcatagacatgtttttactttgaagtttg 216  Q
    |||||||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198891 catgctagaactgttgccaactgatgaaaaaattaactttatgttagaattttaatgttgctgtcatcaactcatagacatgtttttactttgaagtttg 5198792  T
Q  217 attttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgacatgccatttgttttgata---attatggaaaatgctgaacagt 313  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||   |||||||||| || ||||||||    
T  5198791 attttacctctaaatgcattttaagtgcaactcttccttttattgttgcataatgacatgccatttgttttgatatacattatggaaactgttgaacagt 5198692  T
Q  314 atcatagagttagtactctaaatttgttctaattaccatcaatgacaattacaacatgttctggcctagctgcaatgcacacatcatgttctgcaatctt 413  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198691 atgatacagttagtactctaaatttgttctaattaccatcaatgacaattacaacatgttctggcctagctgcaatgcacacatcatgttctgcaatctt 5198592  T
Q  414 tattgattaatttcaaattaggaagttagccgttgagttacttggaannnnnnnnatgaatataataactcaatcaatatgtgtattttatttttctcgt 513  Q
    ||||||||||||||||||||||||||||||||||||       ||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  5198591 tattgattaatttcaaattaggaagttagccgttga-------ggaattttttttatgaatataataactcaatcaatatgtgtattttatttttctcgt 5198499  T
Q  514 gaaatatttgcaaataggaacaagtatgcgagggttatctattttcatatgaactagtcacaaaagtttcctttc 588  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198498 gaaatatttacaaataggaacaagtatgcgagggttatctattttcatatgaactagtcacaaaagtttcctttc 5198424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 5195095 - 5195413
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaatattggtttcaagac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  5195095 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattgatttcaagac 5195194  T
Q  117 catgctagaattgttgcccgttgatgaaaaaattaactttatgttagaattttaatgttgctgtcatcaactcatagacatgtttttactttgaagtttg 216  Q
    |||||||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5195195 catgctagaactgttgccaactgatgaaaaaattaactttatgttagaattttaatgttgctgtcatcaactcatagacatgtttttacgttgaagtttg 5195294  T
Q  217 attttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgacatgccatttgttttgataattatggaaaatgctgaacagtatc 316  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5195295 attttacctcttaatacattttaagtgcagctcttccttttattgttgcataatgacatgccatttgttttcataattatggaaaatgctgaacagtatc 5195394  T
Q  317 atagagttagtactctaaa 335  Q
    |||||||||||||||||||    
T  5195395 atagagttagtactctaaa 5195413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 5177659 - 5177931
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaatattggtttcaagac 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||    
T  5177659 gcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgataatattgacttcaagac 5177758  T
Q  117 catgctagaattgttgcccgttgatgaaaaaattaactttatgttagaattttaatgttgctgtcatcaactcatagacatgtttttactttgaagtttg 216  Q
    ||||||||||||||||||  |||  ||||||||||  |||||||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||||    
T  5177759 catgctagaattgttgccaattggagaaaaaattagttttatgttagaattttaatgttgctgtcataatctcatagacgtgtttttattttgaagtttg 5177858  T
Q  217 attttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgacatgccatttgttttgata 291  Q
    |  ||||||||| ||||||||||||||| | | ||||||||  |||| |  |||||||  |||||||||||||||    
T  5177859 a--ttacctcttgatgcattttaagtgctgctgttcctttttatgtttctgaatgacacaccatttgttttgata 5177931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 6231611 - 6231830
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaatattggtttcaagac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| |||||||||    
T  6231611 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcattgaagaatgataagaatattgatttcaagac 6231710  T
Q  117 catgctagaattgttgcccgttgatgaaaaaattaactttatgttagaattttaatgtt------gctgtcatcaactcatagacatgtttttactttga 210  Q
    ||||||||||||||||||   ||  | |||||||| |||||||||||||||||||||||      |||||||| ||||||||||||||||||||||||||    
T  6231711 catgctagaattgttgccaaatggaggaaaaattagctttatgttagaattttaatgttgctgacgctgtcataaactcatagacatgtttttactttga 6231810  T
Q  211 agtttgattttacctcttaa 230  Q
    |||||||| |||||||||||    
T  6231811 agtttgatattacctcttaa 6231830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 5185101 - 5185320
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaatattggtttcaagac 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||  ||||||||    
T  5185101 gcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcaatgaagattgatgataatattgacttcaagac 5185200  T
Q  117 catgctagaattgttgcccgttgatgaaaaaattaactttatgttagaattttaatgt------tgctgtcatcaactcatagacatgtttttactttga 210  Q
    ||||||||||||||||||  |||| ||| |||||| |||| ||||||| |||||||||      ||||||||| ||||||  |||||||||||||||  |    
T  5185201 catgctagaattgttgccaattgaagaagaaattagctttgtgttagagttttaatgttgctgatgctgtcataaactcagtgacatgtttttacttcaa 5185300  T
Q  211 agtttgattttacctcttaa 230  Q
    |||||||| |||||||||||    
T  5185301 agtttgatgttacctcttaa 5185320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 1795908 - 1795686
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaatattggtttcaagac 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  1795908 gcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattgatttcaagac 1795809  T
Q  117 catgctagaattgttgcccgttgatgaa---aaaattaactttatgttagaattttaatgtt------gctgtcatcaactcatagacatgtttttactt 207  Q
    ||||||||||||||||||   ||  |||       ||| |||||||||||||||||||||||      |||| ||| ||||||||||||||||||| |||    
T  1795808 catgctagaattgttgccaaatggagaatttttttttagctttatgttagaattttaatgttgctgacgctgccataaactcatagacatgttttttctt 1795709  T
Q  208 tgaagtttgattttacctcttaa 230  Q
    ||||||||||| |||||||||||    
T  1795708 tgaagtttgatgttacctcttaa 1795686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 350 - 568
Target Start/End: Original strand, 5177972 - 5178186
Alignment:
Q  350 catcaatgacaattacaacatgttctggcctagctgcaatgcacacatcatgttctgcaatctttattgattaatttcaaattaggaagttagccgttga 449  Q
    ||||||||| |||||||||||||||  |||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||||| |||||||| |||    
T  5177972 catcaatgaaaattacaacatgttc--gcctagttgcaatgtacacatcatgttctgcaatctttcttgattaatttcgaattaggaggttagccgatga 5178069  T
Q  450 gttacttggaannnnnnnnatgaatataataactcaatcaatatgtgtattttatttttctcgtgaaatatttgcaaataggaacaagtatgcgagggtt 549  Q
    ||||||| |||        |||||||||| | ||||||||  |||||||||||||||||||||||||| |||| ||||| |||||||||||| ||||| |    
T  5178070 gttactttgaaattttttgatgaatataacagctcaatca--atgtgtattttatttttctcgtgaaacatttacaaattggaacaagtatgtgagggct 5178167  T
Q  550 atctattttcatatgaact 568  Q
    |||||||||||||||||||    
T  5178168 atctattttcatatgaact 5178186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 5207095 - 5207463
Alignment:
Q  19 ttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaatattggtttcaagacca 118  Q
    |||||| ||||  ||||||||| |||||||||||||||||||||| |||| |||||||  |||||  ||||||||||||||||| ||| |||||||||||    
T  5207095 ttttgcggttccggtgatactaggtgttggtggcatggcttgaaggatgtaaaagtcacgagctctatgaagattgatgagaatgttgatttcaagacca 5207194  T
Q  119 tgctagaattgttgcccgttgatgaaaaaattaactttatgttagaattttaatgttgctgtcatcaactcatagacatgtttttactttgaagtttgat 218  Q
    || |||||||||||    |||  ||| |||||| |||||  |||||| ||||| |||| | ||||||||| |||||||||  |||||||  |||||||||    
T  5207195 tgttagaattgttgggatttggagaagaaattagctttaccttagaagtttaaggttgttttcatcaactgatagacatg--tttacttccaagtttgat 5207292  T
Q  219 tttacctct---taatgcattttaagtgcagttcttccttttattgttgc--ataatgacatgcca-tttgttttgata---attatggaaaatgctgaa 309  Q
     |||||| |   || |||||| ||||| ||  |||||| | |  || |||  |||||||||  ||| ||||||||| ||   | |||| ||||| |||||    
T  5207293 gttaccttttagtattgcattctaagtccacatcttccctattctgctgcatataatgacagaccactttgttttgctatacactatgaaaaattctgaa 5207392  T
Q  310 cagtatcatagagttagtactctaaatttgttctaattaccatcaatgacaattacaacatgttctggcct 380  Q
    ||||||||||||||| |||| || | |||| |||| || ||||| |||||||||||| |||||||||||||    
T  5207393 cagtatcatagagttcgtaccctcattttgctctatttcccatcgatgacaattacagcatgttctggcct 5207463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 33861565 - 33861483
Alignment:
Q  192 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgaca 274  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||  ||||||||||||||    
T  33861565 agacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttccttttaaagttgcataatgaca 33861483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 5171561 - 5171646
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaat 102  Q
    ||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||| | ||||||  |||||||||| ||||||    
T  5171561 gcttttgcatttcttgtgataccaagtgttggtggcatggcttgaaggatgtgaaagttacaagctctatgaagattgacgagaat 5171646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 5178793 - 5179012
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaatattggtttcaagac 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||    
T  5178793 gcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcaatgaagattgatgataatattgatttcaagac 5178892  T
Q  117 catgctagaattgttgcccgttgatgaaaaaattaactttatgttagaattttaatgtt------gctgtcatcaactcatagacatgtttttactttga 210  Q
    ||| ||||||||||||||  |||  |||||| ||| |||||||||||||||||||||||      |||||||| ||||||||||||||||||||||| ||    
T  5178893 cattctagaattgttgccaattggagaaaaatttagctttatgttagaattttaatgttgttgacgctgtcataaactcatagacatgtttttacttcga 5178992  T
Q  211 agtttgattttacctcttaa 230  Q
    |||||||| |||||||||||    
T  5178993 agtttgatgttacctcttaa 5179012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 8306732 - 8306842
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaatattggtttcaagac 116  Q
    |||||||||| |||| |||||| |||||||||||||||||||||||| || ||||||||| | ||||| |||| |||||||||||| ||| ||| || ||    
T  8306732 gcttttgcagctctaatgatacaaagtgttggtggcatggcttgaaggatttgaaagtcacacgctcaatgaaaattgatgagaatgttgattttaaaac 8306831  T
Q  117 catgctagaat 127  Q
    | || ||||||    
T  8306832 cttgttagaat 8306842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 8551861 - 8551751
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaatattggtttcaagac 116  Q
    |||||||||| ||||||||||| || |||||||||||||||||||||||| ||||||||  |  |||| |||| |||||||||||| ||| ||| || ||    
T  8551861 gcttttgcagctctagtgataccaattgttggtggcatggcttgaagaatttgaaagtcgcacactcaatgaaaattgatgagaatgttgattttaaaac 8551762  T
Q  117 catgctagaat 127  Q
    | || ||||||    
T  8551761 cttgttagaat 8551751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 5179026 - 5179077
Alignment:
Q  278 catttgttttgata-attatggaaaatgctgaacagtatcatagagttagta 328  Q
    |||||||||||||| | |||||||||||||||| |||||| |||||||||||    
T  5179026 catttgttttgatacactatggaaaatgctgaatagtatcgtagagttagta 5179077  T

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Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 35611435 - 35611528
Alignment:
Q  192 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgacatgccatttgtt 285  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||  |||||||||||||| ||||||||||    
T  35611435 agacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagtttttccttttaaagttgcataatgacacgccatttgtt 35611528  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 27194264 - 27194357
Alignment:
Q  192 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgacatgccatttgtt 285  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||| |  ||||||||||||||  |||||||||    
T  27194264 agacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttcctttcaaagttgcataatgacacaccatttgtt 27194357  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 27844078 - 27844171
Alignment:
Q  192 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgacatgccatttgtt 285  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||| |  ||||||||||||||  |||||||||    
T  27844078 agacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttcctttcaaagttgcataatgacacaccatttgtt 27844171  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 39441509 - 39441417
Alignment:
Q  192 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgacatgccatttgtt 285  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||||||||||| | |||||||||  |||||||||||||| ||||||||||    
T  39441509 agacatgtttttactttgaagttttatgttacctcttaatgca-tttaagtgcagcttttccttttaaagttgcataatgacacgccatttgtt 39441417  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 35611522 - 35611568
Alignment:
Q  335 atttgttctaattaccatcaatgacaattacaacatgttctggccta 381  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||    
T  35611522 atttgttctaattctcatcaatgacaattacaacatgttatggccta 35611568  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 27194351 - 27194395
Alignment:
Q  335 atttgttctaattaccatcaatgacaattacaacatgttctggcct 380  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  27194351 atttgttctaatt-ctatcaatgacaattacaacatgttctggcct 27194395  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 27844165 - 27844209
Alignment:
Q  335 atttgttctaattaccatcaatgacaattacaacatgttctggcct 380  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  27844165 atttgttctaatt-ctatcaatgacaattacaacatgttctggcct 27844209  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Complemental strand, 39441423 - 39441378
Alignment:
Q  335 atttgttctaattaccatcaatgacaattacaacatgttctggcct 380  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||    
T  39441423 atttgttctaattctcatcaatgacaattacagcatgttatggcct 39441378  T

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Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 16015459 - 16015370
Alignment:
Q  196 atgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgacatgccatttgtt 285  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||  |||||||||||||| ||||||||||    
T  16015459 atgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttccttttaaagttgcataatgacacgccatttgtt 16015370  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 1187171 - 1187273
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaatattggtttcaagac 116  Q
    ||||||||| ||||  | |||| |||||||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||||| || |||| |||||    
T  1187171 gcttttgcatttcttctaatacgaagtgttggtggcatggcttgaaggatgtgaaagtcacaagctctatgaagattgatgagaatgtttgttttaagac 1187270  T
Q  117 cat 119  Q
    |||    
T  1187271 cat 1187273  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 1192877 - 1192962
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaat 102  Q
    ||||||||| ||||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  1192877 gcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatgagaat 1192962  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 896776 - 896841
Alignment:
Q  37 actaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaat 102  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||   | ||||||||||||||    
T  896776 actaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatgagaat 896841  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 1181949 - 1182034
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaat 102  Q
    ||||||||| ||||  ||| | ||||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||    
T  1181949 gcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatgagaat 1182034  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 1197404 - 1197503
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaatattggtttcaagac 116  Q
    ||||||||||||||  |||||| |||||||||||||||| ||||||| ||||||||||||  ||| |  ||||||| ||||||||| ||| ||| |||||    
T  1197404 gcttttgcagttctgatgatacaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgattttaagac 1197503  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 335 - 380
Target Start/End: Complemental strand, 16015376 - 16015331
Alignment:
Q  335 atttgttctaattaccatcaatgacaattacaacatgttctggcct 380  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||    
T  16015376 atttgttctaattctcatcaatgacaattacaacatgttctagcct 16015331  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 18344638 - 18344682
Alignment:
Q  335 atttgttctaattaccatcaatgacaattacaacatgttctggcct 380  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||||    
T  18344638 atttgttctaatt-ctatcaatgacaattacaacatgttttggcct 18344682  T

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Target: scaffold0356 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 15476 - 15393
Alignment:
Q  191 tagacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgaca 274  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||  ||||||||||||||    
T  15476 tagacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttccttttaaagttgcataatgaca 15393  T

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Target: scaffold0356; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 335 - 380
Target Start/End: Complemental strand, 15388 - 15343
Alignment:
Q  335 atttgttctaattaccatcaatgacaattacaacatgttctggcct 380  Q
    |||||||||||||| |||| ||||||||||||||||||| ||||||    
T  15388 atttgttctaattatcatcgatgacaattacaacatgttatggcct 15343  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 31921507 - 31921589
Alignment:
Q  192 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgaca 274  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||  ||||||||||||||    
T  31921507 agacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttccttttaaagttgcataatgaca 31921589  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 10203351 - 10203436
Alignment:
Q  17 gcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaat 102  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  10203351 gcttttgcatttctactgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatgagaat 10203436  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 49611873 - 49611969
Alignment:
Q  20 tttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgagaatattggtttcaagac 116  Q
    ||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||  ||  |||  ||| |||||||||||| ||| ||| |||||    
T  49611873 tttgcggttctagtgataccaagtgttggtggcatggcttgaaggatttgaaagtctcaacttcaaagaaaattgatgagaatgttgattttaagac 49611969  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 335 - 380
Target Start/End: Complemental strand, 617930 - 617886
Alignment:
Q  335 atttgttctaattaccatcaatgacaattacaacatgttctggcct 380  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  617930 atttgttctaatt-ctatcaatgacaattacaacatgttctggcct 617886  T

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Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 41763547 - 41763465
Alignment:
Q  192 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgaca 274  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||  ||||||||||||||    
T  41763547 agacatgtttttactttgaagttttatgttacctcttaatgcattttaagtgcagcttttccttttaaagttgcataatgaca 41763465  T

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Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 2330961 - 2331041
Alignment:
Q  194 acatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcagttcttccttttattgttgcataatgaca 274  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||||||| | |||||||||  ||||||||||||||    
T  2330961 acatgtttttactttgaagttttacgttacctcttaatgcattttaagtgcagcttttccttttaaagttgcataatgaca 2331041  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 2331046 - 2331091
Alignment:
Q  335 atttgttctaattaccatcaatgacaattacaacatgttctggcct 380  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||    
T  2331046 atttgttctaattctcatcaatgacaattacaacatgttttggcct 2331091  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 48233891 - 48233935
Alignment:
Q  335 atttgttctaattaccatcaatgacaattacaacatgttctggcct 380  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||||    
T  48233891 atttgttctaatt-ctatcaatgacaattacaacatgttatggcct 48233935  T

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Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 14191240 - 14191144
Alignment:
Q  192 agacatgtttttactttgaagtttgattttacctcttaatgcattttaagtgcag---ttcttccttttattgttgcataatgacatgccatttgtt 285  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||||||||   |  |||||||||  |||||||||||||| ||||||||||    
T  14191240 agacatgtttttacttcgaagttttatgttacctcttaatgcattttaagtgcagctttatttccttttaaagttgcataatgacacgccatttgtt 14191144  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 14191150 - 14191104
Alignment:
Q  335 atttgttctaattaccatcaatgacaattacaacatgttctggccta 381  Q
    |||||||||||||  |||||||||||||||||||||||| |||||||    
T  14191150 atttgttctaattctcatcaatgacaattacaacatgttatggccta 14191104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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