View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15797_low_4 (Length: 344)
Name: NF15797_low_4
Description: NF15797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15797_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 5687832 - 5687522
Alignment:
| Q |
17 |
taaggattaacaaatagagcaaaaattgaattgatgtgggtcatat--ctctgtaatttgaccatgtattatttacaccacctaaggcgagatatggatt |
114 |
Q |
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| T |
5687832 |
taaggattaacaaatagagcaaaaattgaattgatgtgggtcatatatctctgtaatttgaccatgtattatttacaccacctaaggcgtgatatggatt |
5687733 |
T |
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| Q |
115 |
agtgaatgaagaagagattagacaagatccagagtcatgtggacttggatgttgtttatctatttaattctttgaggaaacgtctttcacagttttggta |
214 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5687732 |
agtgaatgaaga---gattagacaagatccagagtcatgtggacttggatgttgtttatctatttaattctttgaggaaacgtctttcacagttttggta |
5687636 |
T |
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| Q |
215 |
caagaagatacatttcaactatagaatcaagcagtgttagattcacattgtgtaccatatatttgaatgtttaggtcactcctttgtcatattttaaaat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5687635 |
caagaagatacatttcaactatagaatcaagcagtgttagattcacattgtgtaccatatatttgaatgtttaggtcactcctttgtcatattttaaaat |
5687536 |
T |
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| Q |
315 |
attggtgcagaaac |
328 |
Q |
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|||||||||||||| |
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| T |
5687535 |
attggtgcagaaac |
5687522 |
T |
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