View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15797_low_7 (Length: 266)
Name: NF15797_low_7
Description: NF15797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15797_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 17443506 - 17443259
Alignment:
| Q |
1 |
tccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaagtggtggaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443506 |
tccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaagtggtggaaaca |
17443407 |
T |
|
| Q |
101 |
gctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgaaataccacagtgagcaagttgccaagagagctaaggctcttaccatccttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443406 |
gctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaagagagctaaggctcttaccatccttc |
17443307 |
T |
|
| Q |
201 |
actctgctgtgaatgatgatgttttcatgagaatctcacacttggaga |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443306 |
actctgctgtgaatgatgatgttttcatgagaatctcacacttggaga |
17443259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 3058694 - 3058941
Alignment:
| Q |
1 |
tccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaagtggtggaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3058694 |
tccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaagtggtggaaaca |
3058793 |
T |
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| Q |
101 |
gctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgaaataccacagtgagcaagttgccaagagagctaaggctcttaccatccttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3058794 |
gctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaagagagctaaggctcttaccatccttc |
3058893 |
T |
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| Q |
201 |
actctgctgtgaatgatgatgttttcatgagaatctcacacttggaga |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3058894 |
actctgctgtgaatgatgatgttttcatgagaatctcacacttagaga |
3058941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 4873337 - 4873584
Alignment:
| Q |
1 |
tccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaagtggtggaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873337 |
tccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaagtggtggaaaca |
4873436 |
T |
|
| Q |
101 |
gctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgaaataccacagtgagcaagttgccaagagagctaaggctcttaccatccttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4873437 |
gctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaagagagctaaggctcttaccatccttc |
4873536 |
T |
|
| Q |
201 |
actctgctgtgaatgatgatgttttcatgagaatctcacacttggaga |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
4873537 |
actctgctgtgaatgatgatgttttcatgagaatctcacacttagaga |
4873584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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