View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15798_high_2 (Length: 471)
Name: NF15798_high_2
Description: NF15798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15798_high_2 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Original strand, 33370010 - 33370449
Alignment:
| Q |
18 |
acttatagacactagtgtgaaacctgcttctgcaaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33370010 |
acttatagacactagtgtgaaacctgcttctgcaaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgag |
33370109 |
T |
|
| Q |
118 |
agtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33370110 |
agtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccc |
33370209 |
T |
|
| Q |
218 |
cctggatatcccaatgga--cccccggtatgtggttgaggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaac |
315 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33370210 |
cctggatatcccaatggacccccccggtatgtggttgaggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaac |
33370309 |
T |
|
| Q |
316 |
tggtccannnnnnnncatggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctact |
415 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33370310 |
tggtccattttttttcatggcagcaagtccactaccactccggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctact |
33370409 |
T |
|
| Q |
416 |
taacacctggtcaggcgacaaaaatcagatgtggactcca |
455 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
33370410 |
taacacctggtctggtgacaaaaatcagatgtggactcca |
33370449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 58 - 455
Target Start/End: Original strand, 33363708 - 33364104
Alignment:
| Q |
58 |
tcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgatt |
157 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
33363708 |
tcaatctgaccatttctttgacttttttctttaatgcttgtcagatacaatatttgtgagaatcttcgaatcaaggatggatctcatgagagctgtgatt |
33363807 |
T |
|
| Q |
158 |
attggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggat |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||| || |
|
|
| T |
33363808 |
attggagcagaagggactccttaccatgatggtcttttcttttttgatgtttacttcccccctaaatatcccaatgtacccccggtacgtggttgagaat |
33363907 |
T |
|
| Q |
258 |
actttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctg |
357 |
Q |
| |
|
||||||| | ||||| ||||||||| || ||||| ||| |||||||||| |||||| ||| || ||||| | |||||||||||||||| |
|
|
| T |
33363908 |
actttatttagctgacattattttcttgtgcactctttttaattcaattctgacaaa-tgggacaattttttgtggggcagaaagtccactaccactctg |
33364006 |
T |
|
| Q |
358 |
gtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactcca |
455 |
Q |
| |
|
|||| |||||| || || |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
33364007 |
taggtcatcggcttaatccaaatttgtatgattgtggcaaagtatgcctcagtctacttaacacctggtctggcgacaagaatcagatgtggactcca |
33364104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 96 - 249
Target Start/End: Complemental strand, 5839391 - 5839238
Alignment:
| Q |
96 |
catcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtctttt |
195 |
Q |
| |
|
|||||||| |||||||||| |||| || |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5839391 |
catcagattcaatatttgttcgagtttatgaatcaagaatggatctcatgagggctgtaattattggagcagacgggactccttaccatgacggtctttt |
5839292 |
T |
|
| Q |
196 |
cttttttgatgtttactttccccctggatatcccaatggacccccggtatgtgg |
249 |
Q |
| |
|
|||||| ||| ||||||| || ||| | |||||||| ||| ||||||||||| |
|
|
| T |
5839291 |
ctttttcgatctttacttacctggtggctttcccaatgtaccgccggtatgtgg |
5839238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 33 - 455
Target Start/End: Original strand, 41431738 - 41432159
Alignment:
| Q |
33 |
tgtgaaacctgcttctg-caaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaa |
131 |
Q |
| |
|
||||||||||| ||||| || |||| ||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41431738 |
tgtgaaacctgtttctggcatattgatcaacctgaccatatctttgacttttttctttaatgctcatcagatacaatatttgtgagagtcttcgaatcaa |
41431837 |
T |
|
| Q |
132 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaa |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
41431838 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttacttcccccctaaatatcccaa |
41431937 |
T |
|
| Q |
232 |
tggacccccggtatgtggttgaggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnnc |
331 |
Q |
| |
|
|| |||||||||| |||||||| ||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||| ||| |||||| | |
|
|
| T |
41431938 |
tgtacccccggtacgtggttgatgatactttatctgactgacattattttcttgttcactccttttaattcaattccgac-aacgggtcca-tttttttc |
41432035 |
T |
|
| Q |
332 |
atggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggc |
431 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41432036 |
atggcagcaagtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtctggc |
41432135 |
T |
|
| Q |
432 |
gacaaaaatcagatgtggactcca |
455 |
Q |
| |
|
||| ||||||| ||||||||| |
|
|
| T |
41432136 |
agcaagaatcagaaatggactcca |
41432159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 53 - 455
Target Start/End: Original strand, 41442368 - 41442766
Alignment:
| Q |
53 |
attgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctg |
152 |
Q |
| |
|
|||||| ||||||||||||||| || |||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||| |
|
|
| T |
41442368 |
attgcttaacctgaccatttctgtc--ttttttctttaatgctcatcaaatacaatatttgtgagagtctgcgaatcaaggatggatctcttgagagctg |
41442465 |
T |
|
| Q |
153 |
tgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |||||||||| |||||||||| |||||| |
|
|
| T |
41442466 |
tgattattggagcagaagggactccttaccatgacggtcttttcttttttgatgtacactttccaactggctatcccaatgtacccccggtacgtggtta |
41442565 |
T |
|
| Q |
253 |
aggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactacca |
352 |
Q |
| |
|
|| |||||||||||||| |||||| |||||| ||| |||| ||| |||||||||| ||||| |||| | ||||||| ||||||||||| |
|
|
| T |
41442566 |
agaatactttatctgacagacgttgttttcttgttaactctttttaattcaattctaacaaaagggtc--gttattttcgtggcagctagtccactacca |
41442663 |
T |
|
| Q |
353 |
ctctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggact |
452 |
Q |
| |
|
|||| | |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || |
|
|
| T |
41442664 |
ctctagaggtcttcgactcaaccctaatttgtatggctgtggtaaagtatgcctcagtctacttaacacctggtctggcgacagaaatcagatgtgggct |
41442763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 33 - 455
Target Start/End: Original strand, 41426345 - 41426765
Alignment:
| Q |
33 |
tgtgaaacctgcttctg-caaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaa |
131 |
Q |
| |
|
||||||||| ||||||| || |||||||||| |||||||||||||||||||| || ||||| | ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41426345 |
tgtgaaaccagcttctggcatattgctcaacatgaccatttctttcacttttttcattaattctcatcagatacaatatttgtgagagtctgtgaatcaa |
41426444 |
T |
|
| Q |
132 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41426445 |
ggatggatctcatgagggctgtgattattggagcaaaagggactccttaccatgacagtcttttcttttttgatgtttactttccccctggatatcccaa |
41426544 |
T |
|
| Q |
232 |
tggacccccggtatgtggttgaggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnnc |
331 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| || | || ||| ||||| |||||||| ||| ||||||||||||||||| || | | | |
|
|
| T |
41426545 |
tgaacccccggtatgtggttgagaatactttatttggccgatatta-tttcttgttcactctttttaattcaattccgacaaa-tgat-aactttttttc |
41426641 |
T |
|
| Q |
332 |
atggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggc |
431 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||| | |||||||||||||||||| | ||||| | || ||||||||||||||| ||||||| ||| |
|
|
| T |
41426642 |
gtggcagcaagtccactaccattctggaggtcttggactcaaccctaatttgtatagcagtggctatgtttgcctcagtctacttggcacctgggagggc |
41426741 |
T |
|
| Q |
432 |
gacaaaaatcagatgtggactcca |
455 |
Q |
| |
|
||| | || |||||||||||||| |
|
|
| T |
41426742 |
gacgaggatgagatgtggactcca |
41426765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 41453658 - 41453772
Alignment:
| Q |
87 |
tttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatga |
186 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41453658 |
tttaatgctcatcagatacaatatttgtgagagtctatgaatcaaggatggatctcttgagggctgtgattattggagcagaagagactccttaccatga |
41453757 |
T |
|
| Q |
187 |
tggtcttttcttttt |
201 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
41453758 |
cggtcttttattttt |
41453772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 41448905 - 41449006
Alignment:
| Q |
161 |
ggagcagaagggactccttaccatgatggtcttttcttttttgatgtttacttt-ccccctggatatcccaatggacccccggtatgtggttgaggatac |
259 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
41448905 |
ggagcagaagagactccttaccataacggtcttttcttttttgatgtttactttcccccctggatatcccaatgtacccccagtatgtggttgaggatac |
41449004 |
T |
|
| Q |
260 |
tt |
261 |
Q |
| |
|
|| |
|
|
| T |
41449005 |
tt |
41449006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 331 - 455
Target Start/End: Original strand, 41449250 - 41449374
Alignment:
| Q |
331 |
catggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcagg |
430 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || ||| |||||||||||||||||||||| | ||| ||||||| ||||||||||||| ||||||||| || |
|
|
| T |
41449250 |
catggcagcaagtccattaccactctggcggccttgggctcaaccctaatttgtatgcttctgggaaagtatccctcagtctacttgacacctggtttgg |
41449349 |
T |
|
| Q |
431 |
cgacaaaaatcagatgtggactcca |
455 |
Q |
| |
|
| |||| |||||| ||||||||| |
|
|
| T |
41449350 |
caacaaggatcagaaatggactcca |
41449374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 52472991 - 52473046
Alignment:
| Q |
125 |
gaatcaaggatggatctcatgagggctgtgattattggagcagaagggactcctta |
180 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||| || |||||||| |
|
|
| T |
52472991 |
gaatcaaggatggatctcttgagggctgtaattattggagcagatggaactcctta |
52473046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 33 - 455
Target Start/End: Original strand, 5833 - 6253
Alignment:
| Q |
33 |
tgtgaaacctgcttctg-caaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaa |
131 |
Q |
| |
|
||||||||| ||||||| || |||||||||| ||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5833 |
tgtgaaaccagcttctggcatattgctcaacatgaccatttctatcacttttttcattaatgctcatcagatacaatatttgtgagagtctgtgaatcaa |
5932 |
T |
|
| Q |
132 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaa |
231 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5933 |
gaatggatctcatgagggctgtgattattggagcagaagggactccttaccatgacggtcttttcttttttgatgtttactttccccctgaatatcccaa |
6032 |
T |
|
| Q |
232 |
tggacccccggtatgtggttgaggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnnc |
331 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| || | || ||| ||||| |||||||| ||| ||||||||||||||||| |||| || | |
|
|
| T |
6033 |
tgaacccccggtatgtggttgagaatactttatttggcagatatta-tttcttgttcactctttttaattcaattccgacaaa-tggt-cactttttttc |
6129 |
T |
|
| Q |
332 |
atggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggc |
431 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||| | ||||||||||||||||| | ||||| | || ||||||||||||||| ||||||| ||| |
|
|
| T |
6130 |
gtggcagcaagtccactaccattctggaggtcttggagtcaaccctaatttgtatagcagtggctatgtttgcctcagtctacttggcacctgggagggc |
6229 |
T |
|
| Q |
432 |
gacaaaaatcagatgtggactcca |
455 |
Q |
| |
|
||| | || |||||||||||||| |
|
|
| T |
6230 |
gacgaggatgagatgtggactcca |
6253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 33 - 455
Target Start/End: Complemental strand, 17625 - 17205
Alignment:
| Q |
33 |
tgtgaaacctgcttctg-caaattgctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaa |
131 |
Q |
| |
|
||||||||| ||||||| || |||||||||| ||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17625 |
tgtgaaaccagcttctggcatattgctcaacatgaccatttctatcacttttttcattaatgctcatcagatacaatatttgtgagagtctgtgaatcaa |
17526 |
T |
|
| Q |
132 |
ggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaa |
231 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17525 |
gaatggatctcatgagggctgtgattattggagcagaagggactccttaccatgacggtcttttcttttttgatgtttactttccccctgaatatcccaa |
17426 |
T |
|
| Q |
232 |
tggacccccggtatgtggttgaggatactttatctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnnc |
331 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| || | || ||| ||||| |||||||| ||| ||||||||||||||||| |||| || | |
|
|
| T |
17425 |
tgaacccccggtatgtggttgagaatactttatttggcagatatta-tttcttgttcactctttttaattcaattccgacaaa-tggt-cactttttttc |
17329 |
T |
|
| Q |
332 |
atggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggc |
431 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||| | ||||||||||||||||| | ||||| | || ||||||||||||||| ||||||| ||| |
|
|
| T |
17328 |
gtggcagcaagtccactaccattctggaggtcttggagtcaaccctaatttgtatagcagtggctatgtttgcctcagtctacttggcacctgggagggc |
17229 |
T |
|
| Q |
432 |
gacaaaaatcagatgtggactcca |
455 |
Q |
| |
|
||| | || |||||||||||||| |
|
|
| T |
17228 |
gacgaggatgagatgtggactcca |
17205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 57 - 271
Target Start/End: Complemental strand, 7763139 - 7762925
Alignment:
| Q |
57 |
ctcaacctgaccatttctttcacttttatctttaatgcacatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgat |
156 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7763139 |
ctcaacctgaccatttatttgacttttttctttaatgctcatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagagctgtgat |
7763040 |
T |
|
| Q |
157 |
tattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgagga |
256 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| ||| |||||||||| |||||||| |
|
|
| T |
7763039 |
tattggagcacaagggactccttaccatgatggtcttttcttttttgatttatactttccccctgaatatcccgatgaacccccggtacgtggttgaaac |
7762940 |
T |
|
| Q |
257 |
tactttatctgactg |
271 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7762939 |
tactttatctgactg |
7762925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 455
Target Start/End: Complemental strand, 7762885 - 7762763
Alignment:
| Q |
333 |
tggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcg |
432 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||| || |||||||||| |||| | ||||||||||||||||||||||||||| |||| |
|
|
| T |
7762885 |
tggcagcaactcgactaccactctggtggtcttgggctcaatccaaatttgtatgaaaatggctatgtatgcctcagtctacttaacacctgggttggcg |
7762786 |
T |
|
| Q |
433 |
acaaaaatcagatgtggactcca |
455 |
Q |
| |
|
|| | || |||||||||||||| |
|
|
| T |
7762785 |
acgacgatgagatgtggactcca |
7762763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 100 - 246
Target Start/End: Complemental strand, 21223965 - 21223819
Alignment:
| Q |
100 |
agatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttt |
199 |
Q |
| |
|
|||| |||||||||| ||||| || |||||||| || ||||| ||||||||||||||||||||||||| || || ||||| |||||||| || |||||| |
|
|
| T |
21223965 |
agattcaatatttgtcagagtttatgaatcaagaatagatctgttgagggctgtgattattggagcagagggaaccccttatcatgatggcctattcttt |
21223866 |
T |
|
| Q |
200 |
tttgatgtttactttccccctggatatcccaatggacccccggtatg |
246 |
Q |
| |
|
|||||| ||| ||||||| ||| | |||||||| ||| |||||||| |
|
|
| T |
21223865 |
tttgattttttctttcccagtggctttcccaatgtacctccggtatg |
21223819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 427
Target Start/End: Complemental strand, 21223715 - 21223634
Alignment:
| Q |
346 |
actaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtc |
427 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||| ||| ||||||||||| || || || ||||||||||||||||| |
|
|
| T |
21223715 |
actaccactctggtggacttcgactcaacccaaatttatataattgtggcaaagtttgtcttagcctacttaacacctggtc |
21223634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 1004661 - 1004793
Alignment:
| Q |
126 |
aatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggata |
225 |
Q |
| |
|
|||||| |||| |||| |||||||||| ||||||||| || |||||||||||||||| | |||||||||||||||||| ||||||| || | || |
|
|
| T |
1004661 |
aatcaaagatgaatctgttgagggctgtaattattggaccaaaagggactccttaccagcacggtcttttcttttttgatttttacttccctagtaacta |
1004760 |
T |
|
| Q |
226 |
tcccaatggacccccggtatgtggttgaggata |
258 |
Q |
| |
|
||||| || ||||||||||||| |||||||||| |
|
|
| T |
1004761 |
tcccattgtacccccggtatgtcgttgaggata |
1004793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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