View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15798_high_3 (Length: 361)

Name: NF15798_high_3
Description: NF15798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15798_high_3
NF15798_high_3
[»] chr6 (9 HSPs)
chr6 (24-343)||(7990364-7990686)
chr6 (32-268)||(2226286-2226523)
chr6 (33-230)||(12181306-12181502)
chr6 (27-190)||(12648717-12648879)
chr6 (24-268)||(30620675-30620934)
chr6 (32-197)||(23302735-23302897)
chr6 (80-215)||(25558533-25558668)
chr6 (174-223)||(25338480-25338529)
chr6 (32-101)||(6689009-6689077)
[»] chr1 (17 HSPs)
chr1 (32-266)||(49868158-49868391)
chr1 (32-259)||(29639853-29640082)
chr1 (24-263)||(44196126-44196370)
chr1 (32-197)||(6078608-6078773)
chr1 (24-251)||(14201490-14201716)
chr1 (39-250)||(52754547-52754768)
chr1 (26-196)||(32380324-32380494)
chr1 (32-229)||(48607398-48607593)
chr1 (24-149)||(30559779-30559904)
chr1 (38-215)||(31637431-31637608)
chr1 (39-250)||(49465896-49466117)
chr1 (90-197)||(34000394-34000501)
chr1 (80-197)||(24903577-24903694)
chr1 (38-195)||(30054186-30054339)
chr1 (33-108)||(50682809-50682883)
chr1 (24-76)||(22785769-22785821)
chr1 (32-99)||(9636425-9636491)
[»] chr3 (30 HSPs)
chr3 (32-266)||(33776491-33776726)
chr3 (32-266)||(53682062-53682304)
chr3 (32-252)||(16415773-16415993)
chr3 (32-252)||(18516747-18516967)
chr3 (26-266)||(46279347-46279588)
chr3 (24-252)||(47041121-47041360)
chr3 (35-267)||(30381762-30381994)
chr3 (24-197)||(46986586-46986760)
chr3 (24-263)||(20844392-20844646)
chr3 (24-194)||(15667244-15667414)
chr3 (40-230)||(50091244-50091426)
chr3 (57-194)||(24130695-24130832)
chr3 (24-105)||(9740911-9740993)
chr3 (32-223)||(47472580-47472773)
chr3 (186-252)||(16311992-16312058)
chr3 (186-252)||(18488776-18488842)
chr3 (186-252)||(18492986-18493052)
chr3 (165-247)||(19152184-19152266)
chr3 (160-215)||(24989370-24989425)
chr3 (38-192)||(3345096-3345250)
chr3 (32-149)||(55194307-55194423)
chr3 (159-197)||(16312058-16312096)
chr3 (159-197)||(18488842-18488880)
chr3 (159-197)||(18493052-18493090)
chr3 (138-241)||(9740794-9740896)
chr3 (33-96)||(51261327-51261390)
chr3 (132-198)||(51261242-51261308)
chr3 (199-263)||(46986508-46986573)
chr3 (36-100)||(3858870-3858933)
chr3 (36-72)||(24130516-24130552)
[»] chr5 (24 HSPs)
chr5 (24-260)||(19576235-19576483)
chr5 (24-197)||(8911493-8911666)
chr5 (35-264)||(39021586-39021825)
chr5 (47-191)||(3052640-3052783)
chr5 (80-215)||(31649155-31649290)
chr5 (24-123)||(23244927-23245026)
chr5 (24-178)||(15731373-15731526)
chr5 (80-215)||(1705033-1705166)
chr5 (112-223)||(8784983-8785094)
chr5 (24-102)||(4785131-4785209)
chr5 (81-215)||(36704829-36704963)
chr5 (32-197)||(27169578-27169733)
chr5 (80-197)||(12448083-12448200)
chr5 (24-128)||(40813129-40813234)
chr5 (32-139)||(22713791-22713897)
chr5 (80-197)||(6451832-6451948)
chr5 (80-197)||(13760185-13760302)
chr5 (155-250)||(4784991-4785097)
chr5 (131-223)||(12098123-12098215)
chr5 (185-250)||(3052570-3052635)
chr5 (153-201)||(8110815-8110863)
chr5 (186-215)||(6451948-6451977)
chr5 (192-229)||(27169739-27169776)
chr5 (186-222)||(15737005-15737041)
[»] chr7 (21 HSPs)
chr7 (31-266)||(38761526-38761772)
chr7 (32-262)||(38762006-38762237)
chr7 (34-268)||(29952993-29953238)
chr7 (39-250)||(9225699-9225920)
chr7 (17-250)||(43727191-43727437)
chr7 (24-265)||(6113146-6113396)
chr7 (39-195)||(26787010-26787165)
chr7 (32-266)||(25252893-25253126)
chr7 (35-164)||(31035959-31036090)
chr7 (32-197)||(24276772-24276937)
chr7 (80-215)||(20965783-20965918)
chr7 (80-197)||(43216950-43217067)
chr7 (35-196)||(28041910-28042070)
chr7 (38-189)||(23181424-23181573)
chr7 (80-215)||(3118131-3118266)
chr7 (39-123)||(23804878-23804965)
chr7 (101-263)||(47729722-47729890)
chr7 (185-248)||(26787166-26787229)
chr7 (55-128)||(5286888-5286959)
chr7 (209-265)||(31036107-31036164)
chr7 (186-215)||(43217067-43217096)
[»] chr8 (14 HSPs)
chr8 (35-266)||(10869661-10869892)
chr8 (33-197)||(41504685-41504849)
chr8 (31-197)||(8882539-8882705)
chr8 (25-250)||(9255590-9255814)
chr8 (34-230)||(24592439-24592635)
chr8 (84-250)||(13153195-13153360)
chr8 (80-215)||(16594652-16594787)
chr8 (24-194)||(28841217-28841387)
chr8 (24-147)||(22729348-22729471)
chr8 (80-197)||(6623574-6623691)
chr8 (80-197)||(30731858-30731975)
chr8 (40-115)||(14446192-14446267)
chr8 (186-215)||(10614233-10614262)
chr8 (39-68)||(13153158-13153187)
[»] chr4 (20 HSPs)
chr4 (35-264)||(47299777-47300007)
chr4 (32-220)||(21402882-21403069)
chr4 (24-198)||(45586519-45586690)
chr4 (24-223)||(31943421-31943618)
chr4 (41-250)||(24105200-24105408)
chr4 (39-271)||(53693571-53693812)
chr4 (37-267)||(9578101-9578331)
chr4 (24-228)||(3073943-3074147)
chr4 (24-197)||(10985183-10985356)
chr4 (80-215)||(12827111-12827246)
chr4 (80-215)||(24974607-24974742)
chr4 (27-228)||(56039757-56039958)
chr4 (80-197)||(3650690-3650807)
chr4 (80-197)||(50632962-50633079)
chr4 (39-153)||(4324869-4324983)
chr4 (80-191)||(54085565-54085676)
chr4 (186-215)||(17358673-17358702)
chr4 (24-57)||(17358824-17358857)
chr4 (35-131)||(25106559-25106654)
chr4 (203-266)||(30822896-30822960)
[»] chr2 (10 HSPs)
chr2 (32-197)||(31410447-31410612)
chr2 (32-212)||(31708874-31709053)
chr2 (15-194)||(27925738-27925914)
chr2 (24-194)||(30546932-30547100)
chr2 (24-222)||(34318528-34318724)
chr2 (83-197)||(31162175-31162289)
chr2 (33-103)||(28840442-28840512)
chr2 (186-239)||(27925917-27925970)
chr2 (186-215)||(31162289-31162318)
chr2 (186-250)||(45467736-45467800)
[»] scaffold0178 (1 HSPs)
scaffold0178 (32-190)||(16980-17137)
[»] scaffold0726 (1 HSPs)
scaffold0726 (102-215)||(446-559)
[»] scaffold0470 (1 HSPs)
scaffold0470 (80-197)||(12998-13115)
[»] scaffold0002 (1 HSPs)
scaffold0002 (39-123)||(435735-435819)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 24 - 343
Target Start/End: Original strand, 7990364 - 7990686
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggtttttt-ccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||    
T  7990364 agaggtctataatgtttttaaaatggtctccttagaattacctacggtttttttccgtaggtaaatgtggaaaacatgcagtggcagtcatttggcaatg 7990463  T
Q  123 aaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttga 222  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  7990464 acagatagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttatagcgatacaaagaaagtatgggttga 7990563  T
Q  223 ggccgggcgcatgcccaggctagct--gggggtaaaatcgcccctgctgatcactattataaataaatacatattactttttcatgtataaatgatatat 320  Q
    | |||||||||| ||| || |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7990564 gcccgggcgcatacccgggttagctgggggggtaaaatcgcccctgctgatcactattataaataaatacatattactttttcatgtataaatgatatat 7990663  T
Q  321 tttattgataatataacctaaat 343  Q
    |||||||||||||||||||||||    
T  7990664 tttattgataatataacctaaat 7990686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 32 - 268
Target Start/End: Complemental strand, 2226523 - 2226286
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||||| |||||||| |||||||||||   | |||| ||| |||||||||| |||||||    
T  2226523 ataatatttttaaaatcgtctccttagaattacctacagttttttccgtaggtaaaggtggaaaacatatggcgacaatcacttggcaatgacagacaga 2226424  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcg 231  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||    
T  2226423 tttagctacggaaatttgcactatagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaacccaagcg 2226324  T
Q  232 catgcccaggctagctg-ggggtaaaatcgcccctgct 268  Q
    | ||||| ||||||||| ||||||||||||||| ||||    
T  2226323 cgtgcccgggctagctggggggtaaaatcgcccttgct 2226286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 33 - 230
Target Start/End: Original strand, 12181306 - 12181502
Alignment:
Q  33 taatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagat 132  Q
    |||||||||||||||||||| ||| ||||||| |||| |||| ||| |||||||| |||||||| |||||| ||||  |||||| |||||| |||| |||    
T  12181306 taatgtttttaaaatggtctacttggaattacatacg-ttttgtccgtaggtaaaggtggaaaatatgcagcgacatccatttgacaatgacagacggat 12181404  T
Q  133 ttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggc 230  Q
    |||||||||||||||| ||||  ||||||||||||| |  ||||||| |||| |||||||||||||||||||||||||||||| |||| || ||||||    
T  12181405 ttagctacggaaatttatcctagagtgacggatttttgttgtcactacaagttaaatttcttgtagcgatacaaagaaagtatcggttaagcccgggc 12181502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 12648879 - 12648717
Alignment:
Q  27 ggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaag 126  Q
    |||| |||||||||||||||||||||||||| ||| ||||||  |||| ||| |||||||| ||||||||||||||||||||  ||||||||||||| ||    
T  12648879 ggtccataatgtttttaaaatggtctccttataataacctaca-ttttgtccgtaggtaaacgtggaaaacatgcagtgacaaacatttggcaatgacag 12648781  T
Q  127 acagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatt 190  Q
    ||| ||||||||||||||||||||||| | || |||||||||||| ||||||| ||||||||||    
T  12648780 acatatttagctacggaaatttgtcctatggtaacggattttggctgtcactacaagtcaaatt 12648717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 30620934 - 30620675
Alignment:
Q  24 agaggtctataatgt-ttttaaaatggtctccttagaattacctacggttttttc-cataggtaaatgtggaaaacatgcagtgacagtcatttggcaat 121  Q
    ||||||| ||||||| |||||||||| | | |||| ||||||||| | ||||||  ||||||||||||||||||||||| |||||||  ||||| ||||     
T  30620934 agaggtccataatgtattttaaaatgattttcttataattacctaagttttttttgcataggtaaatgtggaaaacatgtagtgacatccatttagcaac 30620835  T
Q  122 gaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagt------------caaatttcttgtagcgatacaaaga 209  Q
    || |||||||||||||||| |||||||| ||| ||||||||||||||||  ||||||| | ||            ||||||||||||||| |||||||||    
T  30620834 gacagacagatttagctacagaaatttgccctatagtgacggattttggttgtcactataggtcaattttttttgcaaatttcttgtagctatacaaaga 30620735  T
Q  210 aagtataggttgaggccgggcgcatgcccaggctagctggg-ggtaaaatcgcccctgct 268  Q
    |||||| ||||||| |||||||  |||| ||||||| |||| ||||||| | ||||||||    
T  30620734 aagtatcggttgagcccgggcgtgtgccaaggctagttgggcggtaaaaacacccctgct 30620675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 23302897 - 23302735
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    ||||||| ||||||| |||||| ||| ||||||| || ||||||||  ||||||||  ||||||| |||||||||||||||||| || |||| | ||| |    
T  23302897 ataatgtatttaaaacggtctctttaaaattacccaccgttttttctgtaggtaaagatggaaaatatgcagtgacagtcattttgc-atgacaaacaaa 23302799  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgta 197  Q
    ||||||||| |||||||  ||  || |||| |||||||||| ||||||||||||||||||| ||||    
T  23302798 tttagctacagaaatttaccc--taatgacagattttggccatcactaaaagtcaaatttcgtgta 23302735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 25558533 - 25558668
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| |||||||| |||  ||||||| ||||||  | ||| |||  |||||||||||  || ||| |||| || |||| |||||||||||| || |    
T  25558533 taggtaaaagtggaaaatatgtcgtgacagccatttgatattgacagatggatttagctacataattttttcctatattgacagattttggccgttacaa 25558632  T
Q  180 aaagtcaaatttcttgtagcgatacaaagaaagtat 215  Q
    ||| |||||||| |||||||||||||||||||||||    
T  25558633 aaattcaaatttgttgtagcgatacaaagaaagtat 25558668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 25338529 - 25338480
Alignment:
Q  174 tcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgag 223  Q
    |||||| |||||||||||||||||| |||||||||||||||| |||||||    
T  25338529 tcactacaagtcaaatttcttgtagtgatacaaagaaagtatgggttgag 25338480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 6689077 - 6689009
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgc 101  Q
    ||||| ||||||||||||||| |||| |||||||||| ||||| ||| | |||||| || ||||||||||    
T  6689077 ataatatttttaaaatggtcttcttaaaattacctac-gttttatccgttggtaaaagtagaaaacatgc 6689009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 32 - 266
Target Start/End: Original strand, 49868158 - 49868391
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| || ||||||||||||| |||||||    
T  49868158 ataatatttttaaaatggtctccttagaattacctacggttttttccgtaggtaaaggtggaaaacttgcagtgatagacatttggcaatgacagacaga 49868257  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcg 231  Q
    |||||||||  ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  49868258 tttagctacataaatttg-cctatagtgacggatttttgccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtatgggttgagcccgggcg 49868356  T
Q  232 catgcccaggctagctgggggtaaaatcgcccctg 266  Q
    | ||||| ||||||||||||| ||||| |||||||    
T  49868357 cgtgcccgggctagctgggggcaaaattgcccctg 49868391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 32 - 259
Target Start/End: Original strand, 29639853 - 29640082
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||||||| |||||||    
T  29639853 ataatgtttttaaaatggtctacttagaattacctacggttttttccgtaggtaaaggtggaaaacttgcagtgacggtcatttggcaatgacagacaga 29639952  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcg 231  Q
    |||||||||| |||||||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||||    
T  29639953 tttagctacgaaaatttgttctatagtgacggattttggccgtcactaaaagttaaattttttgtagcgatacaaagaaagtatgggttgagcccgggcg 29640052  T
Q  232 catgccc-aggctagctg-ggggtaaaatc 259  Q
    | |||||  ||||||||| |||||||||||    
T  29640053 cgtgcccggggctagctgtggggtaaaatc 29640082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 24 - 263
Target Start/End: Complemental strand, 44196370 - 44196126
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggt----tttttccataggtaaatgtggaaaacatgcagtgacagtcatttggca 119  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| | |    ||||||| |||||||| |||||||||||||||||||| ||||||| ||    
T  44196370 agaggtccataatgtttttaaaatggtctccttaaaattacctatgtttttctttttccgtaggtaaaggtggaaaacatgcagtgacaatcatttgaca 44196271  T
Q  120 atgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggt 219  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||    
T  44196270 atgacagacagatttagctacggaaatttgccctatagtgacggattttggctgtcactaaaagtcaaatttcttgtaacgatacaaagaaagtatgggt 44196171  T
Q  220 tgaggccgggcgcatgcccaggctagct-gggggtaaaatcgccc 263  Q
    |||| |||||||| ||||| | |||||| ||||||||||||||||    
T  44196170 tgagcccgggcgcgtgcccggactagctagggggtaaaatcgccc 44196126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 6078608 - 6078773
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  || |||| ||||||||| |||||||||||||||||| |||||| |||||||    
T  6078608 ataatgtttttaaaatggtctccttagaattacctacggttttttcctaagataaaggtggaaaacttgcagtgacagtcatttgacaatgacagacaga 6078707  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgta 197  Q
    |||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  6078708 tttagctacggaaatttgccctatagtgacagattttggccgtcactaaaaatcaaatttcttgta 6078773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 14201490 - 14201716
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    ||||||| |||||||||||||||| || | ||||||||||| |||||||||||||  ||||||| |||||||||||| |||||||| |||||| ||||||    
T  14201490 agaggtccataatgtttttaaaatagttttcttagaattac-tacggttttttccgcaggtaaaggtggaaaacatgtagtgacagccatttgacaatga 14201588  T
Q  124 aagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgag 223  Q
     | || |||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||     
T  14201589 catacggatttatctacggaaatttgccctatagtgatggattttggccgtcactaaaagtcaaatttcttgtagcaatacaaagaaagtatgggttgaa 14201688  T
Q  224 gccgggcgcatgcccaggctagctgggg 251  Q
     |||   || ||||||||||||||||||    
T  14201689 cccgaatgcgtgcccaggctagctgggg 14201716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 39 - 250
Target Start/End: Original strand, 52754547 - 52754768
Alignment:
Q  39 ttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagct 138  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||    
T  52754547 ttttaaaatggtctctttagaattacctacg-ttttttccgtaggtaaatgtggaaaacatgtagtgacagtcaattggcaatgacagacagatttagct 52754645  T
Q  139 acggaaatttgtcctgtagtgacggattttggccgtcactaaaagt-----------caaatttcttgtagcgatacaaagaaagtataggttgaggccg 227  Q
    || |||||||| ||| |||||||||||| ||||  |||||| ||||           ||||||||||||||||||||||||||||||| ||||||| |||    
T  52754646 acagaaatttgccctatagtgacggattctggctatcactataagtcaaatttcttgcaaatttcttgtagcgatacaaagaaagtatcggttgagcccg 52754745  T
Q  228 ggcgcatgcccaggctagctggg 250  Q
     ||| ||||||| ||||||||||    
T  52754746 agcgtatgcccaagctagctggg 52754768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 32380324 - 32380494
Alignment:
Q  26 aggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaa 125  Q
    ||||| || |||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||| ||||||   ||||||||||||| |    
T  32380324 aggtccattatgtttttaaaatggtctccttagaattacctacagttttgtccgtaggtaaaggtggaaaacatgtagtgacgaccatttggcaatgaca 32380423  T
Q  126 gacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgt 196  Q
    |||| |||||||||| |||||||||| | |||||||| | |||||| ||||||||||||||| ||||||||    
T  32380424 gacaaatttagctacagaaatttgtcatatagtgacgaaatttggctgtcactaaaagtcaattttcttgt 32380494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 32 - 229
Target Start/End: Original strand, 48607398 - 48607593
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    ||||||| ||||||||||||||||||||||||  |   ||||| | | |||||||||||| ||| |||||||||||   |||||| |||||| ||  |||    
T  48607398 ataatgtatttaaaatggtctccttagaatta--ttgtgttttgttcgtaggtaaatgtgaaaagcatgcagtgacgaccatttgacaatgatagttaga 48607495  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccggg 229  Q
    |||||||||| || ||| |||| ||||||||||||||||| || |||| ||||||||||| ||||||| ||||||||||||||| ||||||| |||||    
T  48607496 tttagctacgaaattttttcctatagtgacggattttggctgttactacaagtcaaatttattgtagccatacaaagaaagtatgggttgagcccggg 48607593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 30559779 - 30559904
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||| || ||||||||| |||||||||||||| |||||| |||||| ||||||    
T  30559779 agaggtccataatgtttttaaaatggtctccttagaattacctatggttttgtcgataggtaaaggtggaaaacatgcaatgacagccatttgacaatga 30559878  T
Q  124 aagacagatttagctacggaaatttg 149  Q
     | || |||||||||||| |||||||    
T  30559879 tatacggatttagctacgaaaatttg 30559904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 215
Target Start/End: Complemental strand, 31637608 - 31637431
Alignment:
Q  38 tttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagc 137  Q
    ||||||||||||| ||||||||||||||||||||||| |   ||| ||||  |||||||||||  ||||||  |||||  |||||| ||||||||||| |    
T  31637608 tttttaaaatggtatccttagaattacctacggttttgtttgtagttaaagatggaaaacatgttgtgacaaccatttaacaatgatagacagatttaac 31637509  T
Q  138 tacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtat 215  Q
    |||  || ||||| || || |||| ||||||||||||||||| |||||||| || |||||| ||||||||||| ||||    
T  31637508 tacaaaattttgttctataatgacagattttggccgtcactacaagtcaaaatttttgtagtgatacaaagaacgtat 31637431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 250
Target Start/End: Original strand, 49465896 - 49466117
Alignment:
Q  39 ttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagct 138  Q
    ||||||||| || | |||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| |||||| |||||| | ||| | |||||     
T  49465896 ttttaaaattgttttcttagaattacctacgtttttttc-ataggtaaatgtggaaaacatgtagtgacagccatttgacaatgacaaacaaaattagcg 49465994  T
Q  139 acggaaatttgtcctgtagtgacggattttggccgtcactaaaagt-----------caaatttcttgtagcgatacaaagaaagtataggttgaggccg 227  Q
    ||| ||||||  | | |||||| | |||||||  ||||||| ||||           ||||||||||| ||||||||||||||||||| |||||||  ||    
T  49465995 acgaaaattttccttatagtgatgaattttggttgtcactataagtcaaatttcttgcaaatttcttgcagcgatacaaagaaagtatcggttgagctcg 49466094  T
Q  228 ggcgcatgcccaggctagctggg 250  Q
    ||||  |||||||||||||||||    
T  49466095 ggcgtgtgcccaggctagctggg 49466117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 34000501 - 34000394
Alignment:
Q  90 tggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaat 189  Q
    |||||||||||| ||||||||||||||||||||| |||| |||||||||||  |  ||| |||| || |||||||||||||||||||| |||| ||||||    
T  34000501 tggaaaacatgccgtgacagtcatttggcaatgacagacggatttagctacaaatgtttttcctataatgacggattttggccgtcacaaaaaatcaaat 34000402  T
Q  190 ttcttgta 197  Q
    || |||||    
T  34000401 ttgttgta 34000394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 24903694 - 24903577
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  |||| || ||||||||| ||| |||| |||||| ||||  |||||| |||| || ||| |||||||||||||||| |    
T  24903694 taggtaaaggtggaaaacatgtcgtgaaagccatttggcattgagagacggatttaactacataaatttttcctatattgatggattttggccgtcacaa 24903595  T
Q  180 aaagtcaaatttcttgta 197  Q
    ||| |||||||| |||||    
T  24903594 aaattcaaatttgttgta 24903577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 195
Target Start/End: Complemental strand, 30054339 - 30054186
Alignment:
Q  38 tttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagc 137  Q
    |||||||||||||||||    ||||||||| |||||| ||| ||| |||| ||||| |||| |||| | ||| |||||| |||| | ||||||||||| |    
T  30054339 tttttaaaatggtctcc----aattacctatggttttgtccgtagataaaagtggacaacacgcagcgtcagccatttgacaatcacagacagatttaac 30054244  T
Q  138 tacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttg 195  Q
    |||||||||||   |  |||||||  ||||||| ||| |||| |||||||||||||||    
T  30054243 tacggaaatttactccatagtgacaaattttggtcgtaactacaagtcaaatttcttg 30054186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 50682809 - 50682883
Alignment:
Q  33 taatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgaca 108  Q
    |||||||||||||||||| |||||| ||||||||||| |||| ||||||||||||  ||||||||||||| |||||    
T  50682809 taatgtttttaaaatggtatccttataattacctacgattttgtccataggtaaa-atggaaaacatgcaatgaca 50682883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 22785769 - 22785821
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggtttttt 76  Q
    ||||||| ||||| |||||||||| |||| |||| ||||||||||||||||||    
T  22785769 agaggtccataatatttttaaaattgtcttcttaaaattacctacggtttttt 22785821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 9636491 - 9636425
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacat 99  Q
    ||||||||||||||| ||||||||||||| | ||||| ||||| ||  |||||||||||| |||||||    
T  9636491 ataatgtttttaaaacggtctccttagaactgcctac-gttttgtctgtaggtaaatgtgaaaaacat 9636425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 32 - 266
Target Start/End: Complemental strand, 33776726 - 33776491
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| ||||||||||| | ||||||||||||||||||||| |||||||    
T  33776726 ataatgtttttaaaacggtctccttagaattacctatggttttttccgtaggtaaaggtggaaaacatacggtgacagtcatttggcaatgacagacaga 33776627  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcg 231  Q
    |||||||||||||||||  |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||| |||    
T  33776626 tttagctacggaaattttccctacagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtatgggttgaacccgagcg 33776527  T
Q  232 catgcccaggctagctggg-ggtaaaatcgcccctg 266  Q
    | |||||   ||||||||| ||||||||||||||||    
T  33776526 cgtgcccgaactagctgggaggtaaaatcgcccctg 33776491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 32 - 266
Target Start/End: Complemental strand, 53682304 - 53682062
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | |||||    
T  53682304 ataatgtttttaaaatggtcttcttagaattacctacggttttttccataggtaaaggtggaaaacttgcagtgacagtcatttggcaatgacaaacaga 53682205  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgata-------caaagaaagtataggttgagg 224  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||| |||||||     
T  53682204 tttagctacggaaatttgccctatagtgacggattttggctgtcactaaaagtcaaatttcttgtagcgatacaaaatacaaagaaagtatgggttgagc 53682105  T
Q  225 ccgggcgcatgcccaggctagctgg-gggtaaaatcgcccctg 266  Q
    ||  |||| ||||| |||||||||| ||||||||||| |||||    
T  53682104 ccaagcgcgtgcccgggctagctggagggtaaaatcgtccctg 53682062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 32 - 252
Target Start/End: Complemental strand, 16415993 - 16415773
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    |||||||||||||||||||||||||||||||||||| | |||||||  |||| ||| ||||||||||| || |||||||||||||||||||| |||||||    
T  16415993 ataatgtttttaaaatggtctccttagaattacctatgattttttctgtaggaaaaggtggaaaacatacactgacagtcatttggcaatgacagacaga 16415894  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcg 231  Q
    |||| ||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||||    
T  16415893 tttacctacgaaaattttccctatagtgacggattttggccgtcactaaaagtcaaatttcttgtagagatacaaagaaagtatgggttgagctcgggcg 16415794  T
Q  232 catgcccaggctagctggggg 252  Q
    | ||||| |||||||||||||    
T  16415793 cgtgcccgggctagctggggg 16415773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 32 - 252
Target Start/End: Complemental strand, 18516967 - 18516747
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    |||||||||||||||||||||||||||||||||||| | |||||||  |||| ||| ||||||||||| || |||||||||||||||||||| |||||||    
T  18516967 ataatgtttttaaaatggtctccttagaattacctatgattttttctgtaggaaaaggtggaaaacatacactgacagtcatttggcaatgacagacaga 18516868  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcg 231  Q
    |||| ||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||||    
T  18516867 tttacctacgaaaattttccctatagtgacggattttggccgtcactaaaagtcaaatttcttgtagagatacaaagaaagtatgggttgagctcgggcg 18516768  T
Q  232 catgcccaggctagctggggg 252  Q
    | ||||| |||||||||||||    
T  18516767 cgtgcccgggctagctggggg 18516747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 46279347 - 46279588
Alignment:
Q  26 aggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaa 125  Q
    ||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| | | |   ||||||||||||||    
T  46279347 aggtccataatatttttaaaatggtctccttagaattacctacgattttttccgtaggtaaaggtggaaaacatgcaataataactatttggcaatgaaa 46279446  T
Q  126 gacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggc 225  Q
    ||| ||||||||||| |||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |    
T  46279447 gacggatttagctacagaaatttgccctatagtgacgaattttggccgtaactaaaagtcaaatttcttgtagcgatgcaaagaaagtatgggttgagcc 46279546  T
Q  226 cgggcgcatgcccaggctagctggg-ggtaaaatcgcccctg 266  Q
    | ||||| ||||||||||||||||| ||||||  ||||||||    
T  46279547 caggcgcgtgcccaggctagctgggtggtaaatccgcccctg 46279588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 47041360 - 47041121
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  47041360 agaggtccataatatttttaaaatggtctccttagaattacctacggttttttccgtaggtaaaggtggaaaacatgcagtgacagtcatttggctatga 47041261  T
Q  124 aagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtc-----------aaatttcttgtagcgatacaaagaaag 212  Q
     ||||||||||||| || ||| |||| ||| |||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||    
T  47041260 cagacagatttagcgactgaagtttgccctatagtgacggattttggccgtcactaaaagtctaatttgttgtaaatttcttgtagcgatacaaagaaag 47041161  T
Q  213 tataggttgaggccgggcgcatgcccaggctagctggggg 252  Q
    ||  ||||||| |||||| | ||||| |||||||||||||    
T  47041160 taggggttgagcccgggcacgtgcccgggctagctggggg 47041121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 35 - 267
Target Start/End: Complemental strand, 30381994 - 30381762
Alignment:
Q  35 atgtttttaaaatggtctccttagaatt-acctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatt 133  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| || ||||| ||||||||| || ||||||| |||||| ||||||| |||||||||    
T  30381994 atgtttttaaaatggtctccttataatttacctacggttttttccgtatgtaaaggtggaaaacttgtagtgacaatcatttagcaatgacagacagatt 30381895  T
Q  134 tagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgca 233  Q
    || ||||||||||||  ||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||     
T  30381894 taactacggaaatttaccctatagtgacgaattttggctgtcactaaaagtcaaatttcttgtagcgatataaagaaagtatgggttgagcccgggtgcg 30381795  T
Q  234 tgcccaggctagctgggggtaaaatcgcccctgc 267  Q
    ||||| |||||||| |||||||||| ||||||||    
T  30381794 tgcccgggctagct-ggggtaaaattgcccctgc 30381762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 46986760 - 46986586
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggtttttt-ccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatg 122  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| |||||| || ||||||||  |||||||||||||||||||||||||| ||||||    
T  46986760 agaggtccaaaatgtttttaaaatggtctccttagaattacctacgatttttttccgtaggtaaagatggaaaacatgcagtgacagtcatttagcaatg 46986661  T
Q  123 aaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgta 197  Q
    | | ||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  46986660 acaaacagatttagctacggaaattttccctatagtgacggattttggccgtcactaaaagtcaaatttcttgta 46986586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 263
Target Start/End: Complemental strand, 20844646 - 20844392
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  20844646 agaggtccataaattttttaaaatggtctccttagaattacctacggttttttccataggtaaaggtggaaaacatgcaatgacagtcatttgacaatga 20844547  T
Q  124 aagacagatttagctacggaaatttgtcc----tgtagtgacggattttggccgtcactaaaagtcaaatttctt-----------gtagcgatacaaag 208  Q
     ||||| ||||| ||||||||||||| ||    | |||||||||| ||| |||||||||||||| ||||||||||           ||||||||||||||    
T  20844546 cagacaaatttaactacggaaatttgccctacatatagtgacggactttagccgtcactaaaagacaaatttcttgtaaatttctcgtagcgatacaaag 20844447  T
Q  209 aaagtataggttgaggccgggcgcatgcccaggctagctgggggtaaaatcgccc 263  Q
    ||||||| ||||||| | |||||| ||||| |||||  || ||||||||||||||    
T  20844446 aaagtatgggttgagcctgggcgcgtgcccgggctaattgagggtaaaatcgccc 20844392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 15667414 - 15667244
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||| ||||||||| | ||||  |||||| ||||||    
T  15667414 agaggtcaataatgtttttaaaatggtctccttagaattacctacgattttgtccgtaggtaaaggtgcaaaacatgccgcgacaaccatttgacaatga 15667315  T
Q  124 aagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttctt 194  Q
     |||  |||||||||| | ||||||  ||| |||||| ||||||||| |||||||||||||||| ||||||    
T  15667314 cagatggatttagctatgaaaattttccctatagtgatggattttggtcgtcactaaaagtcaattttctt 15667244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 50091426 - 50091244
Alignment:
Q  40 tttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagcta 139  Q
    |||||||||||||||||| ||||||||||        || |||||||||||| |||||||| ||||||||||||||||||||||   ||| ||||| |||    
T  50091426 tttaaaatggtctccttataattacctac--------ccgtaggtaaatgtgaaaaacatgtagtgacagtcatttggcaatgacgtacatatttaccta 50091335  T
Q  140 cggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggc 230  Q
    || ||||||| ||| || |||||||||||||| || | || |||||||| ||| |||||||||||||||||| ||| | ||||| ||||||    
T  50091334 cgaaaatttgccctatattgacggattttggctgttattataagtcaaaattcctgtagcgatacaaagaaaatattgattgagcccgggc 50091244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 57 - 194
Target Start/End: Original strand, 24130695 - 24130832
Alignment:
Q  57 agaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgta 156  Q
    |||||||||||||||||| ||| |||||||| |||||||||||||| |||||  |||||| ||| || ||||| ||||| ||||| ||||||  ||||||    
T  24130695 agaattacctacggttttgtccgtaggtaaaggtggaaaacatgcaatgacaaccatttgtcaaagacagacaaatttatctacgaaaattttccctgta 24130794  T
Q  157 gtgacggattttggccgtcactaaaagtcaaatttctt 194  Q
     | ||||| |||||| ||||||||||||||||||||||    
T  24130795 ttaacggaatttggctgtcactaaaagtcaaatttctt 24130832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 9740993 - 9740911
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaa-ttacctacggttttttccataggtaaatgtggaaaacatgcagtg 105  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |||||||||||||||||    
T  9740993 agaggtccataatgtttttaaaatggtctccttagaaattacctacggttttgtccttaggtaaaagtggaaaacatgcagtg 9740911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 223
Target Start/End: Complemental strand, 47472773 - 47472580
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacag- 130  Q
    ||||||||||||||||||| ||||||||||||||||||||||  ||| |||||||| || ||||||||| |||||  | |||||| |||||| |||| |     
T  47472773 ataatgtttttaaaatggtatccttagaattacctacggtttagtccgtaggtaaaggtagaaaacatggagtga--gccatttgtcaatgatagacggg 47472676  T
Q  131 ---atttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgag 223  Q
       ||||||||||  |||||  |||| |||| || ||||| ||  |||||||   ||||| |||||||||   || ||||||||||||||| ||||    
T  47472675 cacatttagctacaaaaattaatcctatagtaacagatttcggttgtcactacgtgtcaagtttcttgtattaatgcaaagaaagtatagggtgag 47472580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 16312058 - 16311992
Alignment:
Q  186 aaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcatgcccaggctagctggggg 252  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||| |||||||| ||||||||||    
T  16312058 aaatttcttgtagcgatacaaagaaagtatgggttgagctcgggcgcgtgcccaggatagctggggg 16311992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 18488842 - 18488776
Alignment:
Q  186 aaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcatgcccaggctagctggggg 252  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||| |||||||| ||||||||||    
T  18488842 aaatttcttgtagcgatacaaagaaagtatgggttgagctcgggcgcgtgcccaggatagctggggg 18488776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 18493052 - 18492986
Alignment:
Q  186 aaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcatgcccaggctagctggggg 252  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||| |||||||| ||||||||||    
T  18493052 aaatttcttgtagcgatacaaagaaagtatgggttgagctcgggcgcgtgcccaggatagctggggg 18492986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 19152266 - 19152184
Alignment:
Q  165 ttttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcatgcccaggctagct 247  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||  |||||  |||| ||| || |||||||||||    
T  19152266 ttttggccgtcactaaaagttaaatttcttgtagcgatacaaagaaaatatgagttgaacccggacgcgtgtccaggctagct 19152184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 24989370 - 24989425
Alignment:
Q  160 acggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtat 215  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  24989370 acggattttggccgtcagtaaaagttaaatttcttgtagtgatacaaagaaagtat 24989425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 192
Target Start/End: Complemental strand, 3345250 - 3345096
Alignment:
Q  38 tttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagc 137  Q
    |||| |||||||| | |||||||||||||||  |||| |||| | |||||  | |||||||  | ||||||| |||||| || ||| |||| || |||||    
T  3345250 ttttaaaaatggtattcttagaattacctacaattttatccacatgtaaagcttgaaaacacacggtgacagccatttgacattgacagacggaattagc 3345151  T
Q  138 tacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttc 192  Q
    ||||||||||    || |||||||||||||  || ||||||| ||||||||||||    
T  3345150 tacggaaattaactctatagtgacggatttcagctgtcactacaagtcaaatttc 3345096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 55194423 - 55194307
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    ||||| |||||||||||||||||||| | ||||||| | |||| ||| |||||||| ||||||||||||  ||| ||  |||||| |||||| ||||  |    
T  55194423 ataatatttttaaaatggtctccttatagttacctatg-ttttgtccgtaggtaaaagtggaaaacatgtggtggcaaccatttgacaatgacagacgaa 55194325  T
Q  132 tttagctacggaaatttg 149  Q
    ||||||| | ||||||||    
T  55194324 tttagctgcagaaatttg 55194307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 16312096 - 16312058
Alignment:
Q  159 gacggattttggccgtcactaaaagtcaaatttcttgta 197  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  16312096 gacggattttggtcgtcactaaaagtcaaatttcttgta 16312058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 18488880 - 18488842
Alignment:
Q  159 gacggattttggccgtcactaaaagtcaaatttcttgta 197  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  18488880 gacggattttggtcgtcactaaaagtcaaatttcttgta 18488842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 18493090 - 18493052
Alignment:
Q  159 gacggattttggccgtcactaaaagtcaaatttcttgta 197  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  18493090 gacggattttggtcgtcactaaaagtcaaatttcttgta 18493052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 9740896 - 9740794
Alignment:
Q  138 tacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcatgcc 237  Q
    |||||||||||| |   |||| || |||||||||||||| || || ||||||||||||||| |||| ||| ||||||| ||||||  ||||||  |||||    
T  9740896 tacggaaatttgcctcttagtaacagattttggccgtcattataaatcaaatttcttgtagtgatagaaa-aaagtatcggttgaacccgggcatatgcc 9740798  T
Q  238 cagg 241  Q
    ||||    
T  9740797 cagg 9740794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 51261390 - 51261327
Alignment:
Q  33 taatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaa 96  Q
    |||||||||||||||| | || |||||||||||||||||||| | | |||||||| ||| ||||    
T  51261390 taatgtttttaaaatgatatctttagaattacctacggttttgtgcgtaggtaaaggtgaaaaa 51261327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 51261308 - 51261242
Alignment:
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtag 198  Q
    ||||||||| ||||||  |||| |||||| |||||| ||| ||||||| |||||||||||| |||||    
T  51261308 tttagctactgaaattaatcctatagtgatggatttcggctgtcactacaagtcaaatttcgtgtag 51261242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 46986573 - 46986508
Alignment:
Q  199 cgatacaaagaaagtataggttgaggccgggcgcatgcccaggctagctg-ggggtaaaatcgccc 263  Q
    ||||| ||||||||||| ||||||| |||| ||| |||||  |||||||| |||||||||||||||    
T  46986573 cgataaaaagaaagtatgggttgagcccggacgcgtgcccgagctagctggggggtaaaatcgccc 46986508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 3858870 - 3858933
Alignment:
Q  36 tgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatg 100  Q
    |||||||||||| | ||| |||||||||||||| ||||| ||| ||| |||| ||||||||||||    
T  3858870 tgtttttaaaatagcctcattagaattacctac-gttttgtccgtagataaaggtggaaaacatg 3858933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 24130516 - 24130552
Alignment:
Q  36 tgtttttaaaatggtctccttagaattacctacggtt 72  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  24130516 tgtttttaaaacggtctctttagaattacctacggtt 24130552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 19576483 - 19576235
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||    
T  19576483 agaggtccataatgtttttaaaatggtctccttagaattacctacggttttttccgtaggtaaaggtggaaaacatgcaatgacagtcatttggcaatga 19576384  T
Q  124 aagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttctt-----------gtagcgatacaaagaaag 212  Q
     ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||    
T  19576383 cagacagatttagctacggaaattttccctatagtgacggattttggccgtcactaaaagtcaaatttcttgtaaatttttcgtagcgatacaaagaaag 19576284  T
Q  213 tataggttgaggccgggcgcatgcccaggctagct-gggggtaaaatcg 260  Q
    ||| ||||||  |||||||| ||| | ||||| || |||||||||||||    
T  19576283 tatgggttgatcccgggcgcgtgctcgggctaactggggggtaaaatcg 19576235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 8911666 - 8911493
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||    
T  8911666 agaggtccataatatttttaaaatggtctcattagaattacctacggtttttttcgtaggtaaaggtggaaaacatgcagtgacagtcatttggcaatga 8911567  T
Q  124 aagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgta 197  Q
     | ||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||    
T  8911566 caaacaaatttagctacggaaatttgccctatagtgacgaattttggccgtcactaaaagtcaaatttcttgta 8911493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 35 - 264
Target Start/End: Original strand, 39021586 - 39021825
Alignment:
Q  35 atgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagattt 134  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||  ||||||| |||| ||||| ||||||||| ||||| ||||||||||    
T  39021586 atgtttttaaaatggtctccttagaattacctacggttttttccgtagttaaagctggaaaa-atgcggtgacggtcatttggtaatgacagacagattt 39021684  T
Q  135 agctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtc----------aaatttcttgtagcgatacaaagaaagtataggttgagg 224  Q
    ||||||||||||||| ||| |||||| ||||||||||||| ||||||||||          |||||||||| |   ||||||||||||||| ||||||      
T  39021685 agctacggaaatttgccctatagtgatggattttggccgttactaaaagtcaatttcttgtaaatttcttgcaaaaatacaaagaaagtatgggttgaac 39021784  T
Q  225 ccgggcgcatgcccaggctagct-gggggtaaaatcgcccc 264  Q
    || ||||| ||||| |||||||| |||||||||||||||||    
T  39021785 cccggcgcgtgcccgggctagctggggggtaaaatcgcccc 39021825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 191
Target Start/End: Complemental strand, 3052783 - 3052640
Alignment:
Q  47 tggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaat 146  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||  |||||||  ||||| |||||| ||||||||||||||||| ||||    
T  3052783 tggtctccttagaattacctacg-ttttttccgtaggtaaatgtggaaaacatgtggtgacagctatttgacaatgacagacagatttagctacgaaaat 3052685  T
Q  147 ttgtcctgtagtgacggattttggccgtcactaaaagtcaaattt 191  Q
    ||  ||| || |||||||||||| | ||||||| |||||||||||    
T  3052684 tttccctataatgacggattttgactgtcactataagtcaaattt 3052640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 31649155 - 31649290
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  ||||||| |||||| || ||| |||  |||||||| ||  || ||| |||| || |||||||||||||||||||| |    
T  31649155 taggtaaaggtggaaaacatgtcgtgacagccatttgacactgacagatggatttagcaacataattttttcctatattgacggattttggccgtcacaa 31649254  T
Q  180 aaagtcaaatttcttgtagcgatacaaagaaagtat 215  Q
    ||| |||||||| |||||||||||||||||||||||    
T  31649255 aaattcaaatttgttgtagcgatacaaagaaagtat 31649290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 23244927 - 23245026
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    |||||||  |||||||||||||||||| | ||||||||||||||||||||| ||| |||||||| |||||||||||||||||| |  |||||| ||||||    
T  23244927 agaggtccttaatgtttttaaaatggtatgcttagaattacctacggttttgtccgtaggtaaaggtggaaaacatgcagtgataaccatttgacaatga 23245026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 15731373 - 15731526
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    ||||||| ||||| |||||||||||| ||| ||||||||||| | |||||  ||| ||| |||| ||||||||||||||||||||  || ||| ||| ||    
T  15731373 agaggtccataatatttttaaaatggcctc-ttagaattaccaatggtttcgtccgtagttaaaggtggaaaacatgcagtgacaaccacttgacaacga 15731471  T
Q  124 aagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcact 178  Q
     |||  ||||||||||||||||||| ||||  ||||||| |||||||| ||||||    
T  15731472 tagatggatttagctacggaaatttttcctacagtgacgaattttggctgtcact 15731526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 1705033 - 1705166
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| || ||||||||   |||| || |||||||||||||  |||  ||||||||||  |||||| | || || |||||||||||||||| ||| |    
T  1705033 taggtaaaggtagaaaacatattgtgatagccatttggcaatga--gacgaatttagctacataaattttttctatattgacggattttggccgacacaa 1705130  T
Q  180 aaagtcaaatttcttgtagcgatacaaagaaagtat 215  Q
    ||| ||||||||||||||||||||||||||||||||    
T  1705131 aaattcaaatttcttgtagcgatacaaagaaagtat 1705166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 8785094 - 8784983
Alignment:
Q  112 atttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaa 211  Q
    ||||| |||||| ||||||||| ||||||||||| || ||   |||||||||||||||   ||||||| ||||||||||||||||| | ||| |||||||    
T  8785094 atttgacaatgacagacagattaagctacggaaaattttcacatagtgacggattttgattgtcactataagtcaaatttcttgtaacaataaaaagaaa 8784995  T
Q  212 gtataggttgag 223  Q
    ||||||||||||    
T  8784994 gtataggttgag 8784983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 4785209 - 4785131
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgca 102  Q
    ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| || ||||| ||| ||||||||||    
T  4785209 agaggtccataatgtttttaaaatggactccttagaattacttacggttttttccgtatgtaaaggtgaaaaacatgca 4785131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 36704829 - 36704963
Alignment:
Q  81 aggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaa 180  Q
    ||||||| || |||||||||  ||||||| |||||| || ||| | |  |||||||||||  || ||| |||| || |||||||||||||||||||  ||    
T  36704829 aggtaaaggtagaaaacatgtcgtgacagccatttgacactgacataaggatttagctacataattttttcctatattgacggattttggccgtcagcaa 36704928  T
Q  181 aagtcaaatttcttgtagcgatacaaagaaagtat 215  Q
    || |||||||| |||||||||||||||||||||||    
T  36704929 aattcaaatttattgtagcgatacaaagaaagtat 36704963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 27169578 - 27169733
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    |||||||||||||||||||||||||||| |||| ||| ||||| |   |||||||| ||||||||||||||||||||  |||||| |||||| | ||  |    
T  27169578 ataatgtttttaaaatggtctccttagagttacatac-gttttgtttgtaggtaaaagtggaaaacatgcagtgacaaccatttgacaatgacaaacgaa 27169676  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgta 197  Q
    |||| ||||| ||||||  |||         ||||||||||||||||| |||||||||||||||||    
T  27169677 tttaactacgaaaattttccct---------gattttggccgtcactataagtcaaatttcttgta 27169733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 12448200 - 12448083
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  ||||||| ||||||||| ||| |||   ||||||||||  |||||| |||| || ||| |||||||||||||||| |    
T  12448200 taggtaaaggtggaaaacatgtcgtgacagccatttggcactgacagatgaatttagctacataaatttttcctatattgatggattttggccgtcacaa 12448101  T
Q  180 aaagtcaaatttcttgta 197  Q
    ||| |||||||| |||||    
T  12448100 aaattcaaatttgttgta 12448083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 40813234 - 40813129
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtgg-aaaacatgcagtgacagtcatttggcaatg 122  Q
    |||||||  |||||||||||||||||| || ||||||||||||||| |||| |||  ||||||| |||| |||||| |||||||||  ||||| ||||||    
T  40813234 agaggtccttaatgtttttaaaatggtatctttagaattacctacgattttgtccgcaggtaaaggtggaaaaacacgcagtgacaaccatttagcaatg 40813135  T
Q  123 aaagac 128  Q
    | ||||    
T  40813134 acagac 40813129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 22713791 - 22713897
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    |||||||||||||||||||||| |||||||||| ||| ||||| | | | | |||| |||||||||||||| |||||  |||||| |||||| | || ||    
T  22713791 ataatgtttttaaaatggtctctttagaattacatac-gttttgtgcgtcgataaaagtggaaaacatgcaatgacaaccatttgacaatgacatacgga 22713889  T
Q  132 tttagcta 139  Q
    ||||||||    
T  22713890 tttagcta 22713897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 6451832 - 6451948
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  ||||||| |||||| || ||| | ||  ||||||||||  |||||| || | || |||||||||||||||||||| |    
T  6451832 taggtaaaggtggaaaacatgtcgtgacag-catttgacactgataaacgaatttagctacataaatttttcttatattgacggattttggccgtcacaa 6451930  T
Q  180 aaagtcaaatttcttgta 197  Q
    ||| |||||||| |||||    
T  6451931 aaattcaaatttgttgta 6451948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 13760185 - 13760302
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||  ||  ||||||| ||||||||| | | |  | |||||||||||  |||||| |||| || |||||||||||||||||||| |    
T  13760185 taggtaaaggtggaaaatttgttgtgacagccatttggcactaacatgcggatttagctacataaatttttcctatattgacggattttggccgtcacaa 13760284  T
Q  180 aaagtcaaatttcttgta 197  Q
    ||| |||||||| |||||    
T  13760285 aaattcaaatttgttgta 13760302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 4785097 - 4784991
Alignment:
Q  155 tagtgacggattttggccgtcactaaaagtcaaatttcttgta-----------gcgatacaaagaaagtataggttgaggccgggcgcatgcccaggct 243  Q
    |||||||||||||||||||||||||||| |||||||| |||||           | |||||||||||||||| |||||||  || |||||||||||| ||    
T  4785097 tagtgacggattttggccgtcactaaaaatcaaattttttgtaaatttcttgcagtgatacaaagaaagtatgggttgagctcgagcgcatgcccagact 4784998  T
Q  244 agctggg 250  Q
    |||||||    
T  4784997 agctggg 4784991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 12098123 - 12098215
Alignment:
Q  131 atttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgag 223  Q
    ||||||||||| || |||  ||| |||||||||||||||||  ||| || ||||||| |||||||||| |||  ||||||||||| |||||||    
T  12098123 atttagctacgaaagtttaccctatagtgacggattttggctatcattacaagtcaattttcttgtagtgattaaaagaaagtatgggttgag 12098215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 3052635 - 3052570
Alignment:
Q  185 caaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcatgcccaggctagctggg 250  Q
    |||||||||||||||||| ||||||||| || ||||||  |||||||  || ||||||||||||||    
T  3052635 caaatttcttgtagcgattcaaagaaagcatcggttgaacccgggcgtgtgtccaggctagctggg 3052570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 8110863 - 8110815
Alignment:
Q  153 tgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcga 201  Q
    ||||||||||| ||||| ||||||||| ||||||| |||||||||||||    
T  8110863 tgtagtgacggtttttgcccgtcactacaagtcaagtttcttgtagcga 8110815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 6451948 - 6451977
Alignment:
Q  186 aaatttcttgtagcgatacaaagaaagtat 215  Q
    ||||||||||||||||||||||||||||||    
T  6451948 aaatttcttgtagcgatacaaagaaagtat 6451977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 27169739 - 27169776
Alignment:
Q  192 cttgtagcgatacaaagaaagtataggttgaggccggg 229  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  27169739 cttgtagcgatacaaagaaagtatgggttgagcccggg 27169776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 15737005 - 15737041
Alignment:
Q  186 aaatttcttgtagcgatacaaagaaagtataggttga 222  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  15737005 aaatttcttgtagtgatacaaagaaaatataggttga 15737041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 31 - 266
Target Start/End: Complemental strand, 38761772 - 38761526
Alignment:
Q  31 tataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacag 130  Q
    |||||||||||||||||| ||| ||||||||||||||  ||||||||| |||||||| ||||||||| |||||||||| |||||| ||||||| ||||||    
T  38761772 tataatgtttttaaaatgatctacttagaattacctatagttttttccgtaggtaaaagtggaaaacttgcagtgacactcatttagcaatgatagacag 38761673  T
Q  131 atttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttct-----------tgtagcgatacaaagaaagtataggt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||           |||||||||| ||||||| ||| |||    
T  38761672 atttagctacggaaatttgtcctatagtgacggattttggccgtcactaaaagtcaaatttcttgtaaatttcttgtagcgatataaagaaattatgggt 38761573  T
Q  220 tgaggccgggcgcatgcccaggctagctgggggtaaaatcgcccctg 266  Q
    |||| | |||||||||||| ||||| |||||||||||||||||||||    
T  38761572 tgagcctgggcgcatgcccgggctaactgggggtaaaatcgcccctg 38761526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 32 - 262
Target Start/End: Complemental strand, 38762237 - 38762006
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||| ||||||||| ||| |||||||||||||  |||||| |||||||    
T  38762237 ataatgtttttaaaatgatctctttagaattacctacagttttttccgtaggtaaaggtggaaaacttgcggtgacagtcatttaacaatgacagacaga 38762138  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcg 231  Q
    |||||||||| |||||||  ||  |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||     
T  38762137 tttagctacgaaaatttgctctacagtggctgattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtatgggttgagcccgagca 38762038  T
Q  232 catgcccaggctagct-gggggtaaaatcgcc 262  Q
    | ||||| || ||||| |||||||||||||||    
T  38762037 cgtgcccgggttagctggggggtaaaatcgcc 38762006  T

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Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 34 - 268
Target Start/End: Original strand, 29952993 - 29953238
Alignment:
Q  34 aatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatt 133  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||||  ||||||||||||| | ||||| || ||||||    
T  29952993 aatgtatttaaaacggtctccttagaattacctacgattttttccgtaggtaaaggtggaaaacatgtcgtgacagtcattttgaaatgacagccagatt 29953092  T
Q  134 tagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtc-----------aaatttcttgtagcgatacaaagaaagtataggttga 222  Q
    || ||| ||||||||||||| |||||| ||||||||| |||||| |||||||           ||||||||| |||| ||||||||||||||| ||||||    
T  29953093 taactatggaaatttgtcctatagtgatggattttggtcgtcacaaaaagtcaaatttcgtgtaaatttcttatagcaatacaaagaaagtatgggttga 29953192  T
Q  223 ggccgggcgcatgcccaggctagctgggggtaaaatcgcccctgct 268  Q
    | |||||||| |||||  |||||||||||||||||| |||||||||    
T  29953193 gcccgggcgcgtgcccgagctagctgggggtaaaattgcccctgct 29953238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 9225920 - 9225699
Alignment:
Q  39 ttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagct 138  Q
    ||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||    
T  9225920 ttttaaaatggtctccttaaaattacctaca-ttttttccataggtaaatgtggaaaacatgtagtgacagccatttggcaatgacagatagatttaact 9225822  T
Q  139 acggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaa-----------atttcttgtagcgatacaaagaaagtataggttgaggccg 227  Q
    ||| ||||||| ||   |||||||||||||||| ||||||| |||||||           ||||||||||| |||||||||||||||| ||||||| |||    
T  9225821 acgaaaatttgccccaaagtgacggattttggctgtcactacaagtcaaatttgttgaaaatttcttgtagtgatacaaagaaagtatcggttgagcccg 9225722  T
Q  228 ggcgcatgcccaggctagctggg 250  Q
    ||||  |||||||||||| ||||    
T  9225721 ggcgtgtgcccaggctagttggg 9225699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 43727437 - 43727191
Alignment:
Q  17 taggtagag-aggtctataatgt-ttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatt 114  Q
    ||||||||| ||||| ||||||| ||||||||||||| ||||||||| ||||||  |||||||| ||||||||||||| ||||||| |||||||| ||||    
T  43727437 taggtagaggaggtccataatgtattttaaaatggtcaccttagaatcacctacatttttttccgtaggtaaatgtgggaaacatgtagtgacagccatt 43727338  T
Q  115 tggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttg-----------tagcgata 203  Q
    || |||||| | ||||||||   |||||||||||| ||| ||||||||||||||||| || |||| |||||||||||||||           ||||||||    
T  43727337 tgacaatgacaaacagatttgaatacggaaatttgccctatagtgacggattttggctgttactataagtcaaatttcttgcaaatttcttatagcgata 43727238  T
Q  204 caaagaaagtataggttgaggccgggcgcatgcccaggctagctggg 250  Q
    |||||||||||| ||||||  |||||||  |||||||||||||||||    
T  43727237 caaagaaagtattggttgaacccgggcgtgtgcccaggctagctggg 43727191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 24 - 265
Target Start/End: Complemental strand, 6113396 - 6113146
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgac-agtcatttggcaatg 122  Q
    ||||||| ||||| |||||||||| | |||||||||||||||||| ||||| ||  |||||||| ||||||||||||||||||| |  ||||||||  ||    
T  6113396 agaggtccataatatttttaaaatagactccttagaattacctac-gttttgtctgtaggtaaaggtggaaaacatgcagtgacaacacatttggc--tg 6113300  T
Q  123 aaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttctt-----------gtagcgatacaaagaaa 211  Q
    | | || |||||||||||||||||||  ||| |||||||||||||||||  |||||| ||||||||||||||           |||||||||||||||||    
T  6113299 acatacggatttagctacggaaatttaccctatagtgacggattttggctatcactacaagtcaaatttcttgcaaatttcgggtagcgatacaaagaaa 6113200  T
Q  212 gtataggttgaggccgggcgcatgcccaggctagctgggggtaaaatcgcccct 265  Q
    |||| ||||||| | |||||  |||| | ||||||||||||||||| |||||||    
T  6113199 gtatcggttgagcctgggcgtgtgcctaagctagctgggggtaaaaacgcccct 6113146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 39 - 195
Target Start/End: Original strand, 26787010 - 26787165
Alignment:
Q  39 ttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagct 138  Q
    ||||||||||||||||||||||||||||||  |||||||| || |||||| || |||||||| | |||||  ||||||||||||| ||||| ||||||||    
T  26787010 ttttaaaatggtctccttagaattacctaca-ttttttccgtatgtaaatatgaaaaacatgtaatgacaaccatttggcaatgacagacaaatttagct 26787108  T
Q  139 acggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttg 195  Q
    | ||||||||| ||| ||||||||||||||||| ||| ||| |||||||||||||||    
T  26787109 atggaaatttgccctatagtgacggattttggctgtctctataagtcaaatttcttg 26787165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 32 - 266
Target Start/End: Complemental strand, 25253126 - 25252893
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgac-agtcatttggcaatgaaagacag 130  Q
    ||||| |||||||||||| |||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||| |  ||||||||  ||| |||  |    
T  25253126 ataatatttttaaaatggactccttagaattacctac-gttttgtccgtaggtaaaggtggaaaacatgcagtgacaacacatttggc--tgacagaagg 25253030  T
Q  131 atttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggc 230  Q
    |||||||||||||||||   | | ||  |||  ||||||||  |||||| ||||||||||||||||||| ||||||||||||||| ||||||| | | ||    
T  25253029 atttagctacggaaattaaccatataacgacaaattttggctttcactacaagtcaaatttcttgtagcaatacaaagaaagtatcggttgagcctgagc 25252930  T
Q  231 gcatgcccaggctagctgggg-gtaaaatcgcccctg 266  Q
    |  |||||| ||| ||||||| |||||| ||||||||    
T  25252929 gtgtgcccaagctggctggggagtaaaaacgcccctg 25252893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 31035959 - 31036090
Alignment:
Q  35 atgtttttaaaatggtctccttagaattacctacggtttttt--ccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagat 132  Q
    ||||||||||||||||||||||||||||||||||||||||||  |  |||||||| ||||||||| || ||||||||||||||| |||||| ||||| ||    
T  31035959 atgtttttaaaatggtctccttagaattacctacggttttttttcggtaggtaaaggtggaaaacttgtagtgacagtcatttgacaatgacagacatat 31036058  T
Q  133 ttagctacggaaatttgtcctgtagtgacgga 164  Q
    ||| ||||||||||||  ||| ||||||||||    
T  31036059 ttaactacggaaattttccctatagtgacgga 31036090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 24276772 - 24276937
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||  || |||||  || |||||||  ||||| || |||||| |||||| |||  ||    
T  24276772 ataatgtttttaaaatggtctccttagagttacctacggttttgtctgtaagtaaagatgaaaaacatttagtgatagccatttgacaatgacagatgga 24276871  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgta 197  Q
    ||| |||||||||||||  ||| |||||| ||||||||||  ||||||||| |||| ||| |||||    
T  24276872 tttcgctacggaaattttccctatagtgaaggattttggctatcactaaaattcaatttttttgta 24276937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 20965918 - 20965783
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  ||||||| |||||| || ||| |||  |||||||| ||  || ||| |||| || ||||||||||| |||||||| |    
T  20965918 taggtaaaggtggaaaacatgtcgtgacagccatttgacactgacagatggatttagcaacataattttttcctatattgacggattttagccgtcacaa 20965819  T
Q  180 aaagtcaaatttcttgtagcgatacaaagaaagtat 215  Q
    ||| |||||||| |||||||||||||||||||||||    
T  20965818 aaattcaaatttgttgtagcgatacaaagaaagtat 20965783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 43216950 - 43217067
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  ||||||| ||||||||| ||| |||| |||||||||||  |||||| |||| || ||||||||||| || ||||| |    
T  43216950 taggtaaaggtggaaaacatgtcgtgacagccatttggcactgacagacggatttagctacataaatttttcctatattgacggattttagctgtcacaa 43217049  T
Q  180 aaagtcaaatttcttgta 197  Q
    ||| |||||||| |||||    
T  43217050 aaattcaaatttgttgta 43217067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 196
Target Start/End: Original strand, 28041910 - 28042070
Alignment:
Q  35 atgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagattt 134  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||  | |||||| ||| |||||||||| |||||| |||||| |||||| |||  |||||    
T  28041910 atgtttttaaagtggtatccttagaattacctacggttttgtctgt-ggtaaaggtgaaaaacatgcattgacagccatttgacaatgacagaaggattt 28042008  T
Q  135 agctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgt 196  Q
    | ||||||  |||    || |||||  |||||| ||||||| ||| ||||||||||| ||||    
T  28042009 aactacggctattaactctatagtgttggatttcggccgtcgctacaagtcaaattttttgt 28042070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 189
Target Start/End: Original strand, 23181424 - 23181573
Alignment:
Q  38 tttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagc 137  Q
    |||| |||||| |||||||| | |||| |||| |||| | | |||||||| ||| ||||| ||||||||||  |||||| |||||| ||||| ||||| |    
T  23181424 ttttaaaaatgatctccttatagttacttacg-ttttgtacgtaggtaaaagtgaaaaacgtgcagtgacaaccatttgacaatgacagacatatttaac 23181522  T
Q  138 tacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaat 189  Q
    |||| ||||||| ||| |||| ||||||||||||| | |||| |||||||||    
T  23181523 tacgaaaatttggcctatagtaacggattttggccat-actataagtcaaat 23181573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 3118131 - 3118266
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  ||||||  |||||| || ||| |||| |||||| ||||  |||||| | || || | || |||||| |||||||| |    
T  3118131 taggtaaaggtggaaaacatgtcgtgacaaccatttgacactgacagacggatttatctacataaattttttctatatttacagattttagccgtcacaa 3118230  T
Q  180 aaagtcaaatttcttgtagcgatacaaagaaagtat 215  Q
    ||| | |||||| |||||| ||||||||||||||||    
T  3118231 aaattaaaatttgttgtagtgatacaaagaaagtat 3118266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 23804878 - 23804965
Alignment:
Q  39 ttttaaaatggtctccttagaattac---ctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    ||||||||||||  |||||||||||    |||||||||| ||| |||||||| ||||||||||||| ||||||| |||||| ||||||    
T  23804878 ttttaaaatggtaaccttagaattatactctacggttttgtccgtaggtaaaggtggaaaacatgcggtgacagccatttgacaatga 23804965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 263
Target Start/End: Complemental strand, 47729890 - 47729722
Alignment:
Q  101 cagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaag-----tcaaatttcttg 195  Q
    |||||||| ||||||||||| || | ||  ||||||||| | ||||||| ||| ||||||| ||| ||| ||||||||| |||     ||||||||||||    
T  47729890 cagtgacaatcatttggcaacgacaaacgaatttagctatgaaaatttgccctatagtgacagatcttgaccgtcactacaagtcaaatcaaatttcttg 47729791  T
Q  196 tagcgatacaaagaaagtataggttgaggccgggcgcatgcccaggctagctggg-ggtaaaatcgccc 263  Q
    ||  ||||||||||||| || |||| || ||||||   |||||||||| || ||| ||||||| |||||    
T  47729790 taatgatacaaagaaagcatgggttaagtccgggcatgtgcccaggctcgccgggtggtaaaaccgccc 47729722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 26787166 - 26787229
Alignment:
Q  185 caaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcatgcccaggctagctg 248  Q
    ||||||||||||||||||||||||||| |||  |||||| || ||||  |||||||||||||||    
T  26787166 caaatttcttgtagcgatacaaagaaaatatcagttgagcccaggcgtgtgcccaggctagctg 26787229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 5286959 - 5286888
Alignment:
Q  55 ttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagac 128  Q
    |||| |||||||||||||||| ||||||||||| |||| ||||||  ||||||||||||||| |||||| ||||    
T  5286959 ttagtattacctacggttttt-ccataggtaaaggtgg-aaacatatagtgacagtcatttgacaatgatagac 5286888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 31036107 - 31036164
Alignment:
Q  209 aaagtataggttgaggccgggcgcatgcccaggctagctggggg-taaaatcgcccct 265  Q
    ||||||| ||||||| |||||||| ||||| ||||||||||||| |||||||||||||    
T  31036107 aaagtatgggttgagcccgggcgcgtgcccgggctagctgggggttaaaatcgcccct 31036164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 43217067 - 43217096
Alignment:
Q  186 aaatttcttgtagcgatacaaagaaagtat 215  Q
    ||||||||||||||||||||||||||||||    
T  43217067 aaatttcttgtagcgatacaaagaaagtat 43217096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 35 - 266
Target Start/End: Complemental strand, 10869892 - 10869661
Alignment:
Q  35 atgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagattt 134  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||| ||||| |||||| |||||||||||| |||||||| |    
T  10869892 atgtttttaaaatggtctcct-agaattacctatggttttttccgtaggtaaaagtggaaaacttgcagcgacagttatttggcaatgacagacagatgt 10869794  T
Q  135 agctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcat 234  Q
    ||||||||||||||| ||| |||| ||| ||||||||| ||||||||||| ||||||||||||  |||||||||||||||| ||||||| ||| |||| |    
T  10869793 agctacggaaatttgccctatagtaacgaattttggccatcactaaaagttaaatttcttgtaatgatacaaagaaagtatgggttgagcccgagcgcgt 10869694  T
Q  235 gcccaggctagctg-ggggtaaaatcgcccctg 266  Q
    ||||| |||||||| ||||||||||||||||||    
T  10869693 gcccaagctagctggggggtaaaatcgcccctg 10869661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 41504849 - 41504685
Alignment:
Q  33 taatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagat 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  |||||| |||| ||||||||    
T  41504849 taatgtttttaaaatggtctccttagaattacctacggttttttccgtaggtaaaggtggaaaacatgcagtgacagtgttttggccatgacagacagat 41504750  T
Q  133 ttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgta 197  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  41504749 ttagctacggaaatttgccctatagtgatggattttggccgtcactaaaagtcaaatttcttgta 41504685  T

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Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 31 - 197
Target Start/End: Original strand, 8882539 - 8882705
Alignment:
Q  31 tataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacag 130  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| |||||| ||||||    
T  8882539 tataatgtttttaaaattgtctctttagaattacctacggttttttccgtaggtaaaggtggaaaacttgcagtgacagtcatttgtcaatgatagacag 8882638  T
Q  131 atttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgta 197  Q
    ||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  8882639 atttagctaaggaaatttttcctatagtgacggattttggccgtcactaaaagtcaaatttcttgta 8882705  T

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Target: chr8; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 9255814 - 9255590
Alignment:
Q  25 gaggtctataatgt-ttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||| || ||  | | |||||||||| |||||||| |||||||| |||||||||| ||    
T  9255814 gaggtccataatgtattttaaaatggtctccttagaattacctacgtttatt--cgttggtaaatgtgtaaaacatgtagtgacagccatttggcaacga 9255717  T
Q  124 aagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgag 223  Q
     | ||| ||||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |  |||||||    
T  9255716 catacaaatttagctacggaaatttgccctatagtgacggattttggctgtcactataagtcaaatttcttgtagcgatacaaagaaagaaacggttgag 9255617  T
Q  224 gccgggcgcatgcccaggctagctggg 250  Q
     ||||| |  ||| |||||||||||||    
T  9255616 cccgggtgtgtgcacaggctagctggg 9255590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 24592439 - 24592635
Alignment:
Q  34 aatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatt 133  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||  |||||||||||||||||||  |||||| |||||| | | ||||     
T  24592439 aatgtttttaaaatggtatccttagaattacctacggttttgtccctaggtaaagatggaaaacatgcagtgacaaccatttgacaatgacatatagatg 24592538  T
Q  134 tagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggc 230  Q
    |||||||| |||||   ||| |||||||||||||  || ||||| | |||||||||||||||||  |||||||||||||||| | ||||| ||||||    
T  24592539 tagctacgaaaattaaccctatagtgacggatttcagctgtcaccataagtcaaatttcttgtactgatacaaagaaagtatggattgagcccgggc 24592635  T

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Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 13153195 - 13153360
Alignment:
Q  84 taaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaag 183  Q
    ||||||| ||||||||| | |||||  ||||||||||||| | ||| ||||||||||  ||||||| ||  ||||||||||||||||| ||||||| |||    
T  13153195 taaatgtcgaaaacatgtaatgacaaccatttggcaatgacaaacaaatttagctacataaatttgccca-tagtgacggattttggctgtcactataag 13153293  T
Q  184 tcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcatgcccaggctagctggg 250  Q
    | |||||||||||| |||||||||||||||||   |||||  ||||||  |||||||||||||||||    
T  13153294 ttaaatttcttgtaacgatacaaagaaagtatcaattgagctcgggcgtgtgcccaggctagctggg 13153360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 16594787 - 16594652
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  ||||||| |||||| || ||| |||  |||||||||||  || ||| |||| || |||||||||||||||||||| |    
T  16594787 taggtaaaggtggaaaacatgtcgtgacagccatttgacactgacagatggatttagctacataattttttcctatattgacggattttggccgtcacaa 16594688  T
Q  180 aaagtcaaatttcttgtagcgatacaaagaaagtat 215  Q
    ||| |||||||| |||||||||||||||||||||||    
T  16594687 aaattcaaatttgttgtagcgatacaaagaaagtat 16594652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 28841387 - 28841217
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    |||||||  |||| ||||||||||||| || ||||||||||||||| |||| ||| |||||||| ||| |||| |||| ||||||| |||||| ||||||    
T  28841387 agaggtccttaatatttttaaaatggtatctttagaattacctacgattttgtccgtaggtaaaggtgaaaaatatgccgtgacagccatttgacaatga 28841288  T
Q  124 aagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttctt 194  Q
     | || ||||||||||||||||||    || ||||||||||||| ||   ||||||||| |||||||||||    
T  28841287 catacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 28841217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 22729471 - 22729348
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    |||||||  |||||||||||||||||| || ||||||||||||||| |||| |||||||  ||| |||||||| |||| ||||||| |||||| ||||||    
T  22729471 agaggtccttaatgtttttaaaatggtatctttagaattacctacgattttgtccatagccaaaggtggaaaatatgccgtgacagccatttgacaatga 22729372  T
Q  124 aagacagatttagctacggaaatt 147  Q
     | ||  |||||||||||||||||    
T  22729371 catacgaatttagctacggaaatt 22729348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 6623691 - 6623574
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  ||||||| ||||||||| ||| ||||  ||||||||||  |||||| |||| || |||||||||||||||||||| |    
T  6623691 taggtaaaggtggaaaacatgtcgtgacagccatttggcactgacagacgaatttagctacataaatttttcctatattgacggattttggccgtcacaa 6623592  T
Q  180 aaagtcaaatttcttgta 197  Q
    ||| |||||||| |||||    
T  6623591 aaattcaaatttgttgta 6623574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 30731858 - 30731975
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| |||||||||||   |||| || ||||||||||||| ||||  ||||||||||  |||||| |||| || |||||||||||||||||||| |    
T  30731858 taggtaaaggtggaaaacatatcgtgatagccatttggcaatgacagacgaatttagctacataaatttttcctatattgacggattttggccgtcacaa 30731957  T
Q  180 aaagtcaaatttcttgta 197  Q
    ||| |||||||| |||||    
T  30731958 aaattcaaatttgttgta 30731975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 14446267 - 14446192
Alignment:
Q  40 tttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcattt 115  Q
    ||||||||||| |||||||||||||| | |||||| ||  |||||||| ||||||||||||| |||||| ||||||    
T  14446267 tttaaaatggtatccttagaattaccaatggttttgtctgtaggtaaaggtggaaaacatgcggtgacaatcattt 14446192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 10614262 - 10614233
Alignment:
Q  186 aaatttcttgtagcgatacaaagaaagtat 215  Q
    ||||||||||||||||||||||||||||||    
T  10614262 aaatttcttgtagcgatacaaagaaagtat 10614233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 13153158 - 13153187
Alignment:
Q  39 ttttaaaatggtctccttagaattacctac 68  Q
    ||||||||||||||||||||||||||||||    
T  13153158 ttttaaaatggtctccttagaattacctac 13153187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 35 - 264
Target Start/End: Complemental strand, 47300007 - 47299777
Alignment:
Q  35 atgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagattt 134  Q
    ||||||||||||||||||| ||||||||||||| | |||||||| |||||||| |||||||| ||| |||||||||||||||||||| | ||||||||||    
T  47300007 atgtttttaaaatggtctctttagaattacctaggattttttccgtaggtaaaggtggaaaatatgtagtgacagtcatttggcaataacagacagattt 47299908  T
Q  135 agctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcat 234  Q
    ||||||| ||||||| ||| |||||| ||||||||  ||||| |||||||||||||||||||||| ||||||||||||||| |||||||  ||| ||| |    
T  47299907 agctacgaaaatttgccctatagtgatggattttgctcgtcattaaaagtcaaatttcttgtagcaatacaaagaaagtatgggttgagctcggacgcgt 47299808  T
Q  235 gcccaggctagctg-ggggtaaaatcgcccc 264  Q
    |||| ||||||||| ||||||||||||||||    
T  47299807 gcccgggctagctggggggtaaaatcgcccc 47299777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 21403069 - 21402882
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    |||||||||||||||||||||||||||||  | ||  | ||||| ||||||||||| ||||||||||||| ||||||| |||||| |||||| |||| ||    
T  21403069 ataatgtttttaaaatggtctccttagaagaaacttagattttt-ccataggtaaaggtggaaaacatgcggtgacagccatttgacaatgacagacgga 21402971  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggtt 220  Q
    ||||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  21402970 tttagctataaaaatttgtcctatagtgacggattttggccgtcactaaaagtcaaatttcttttagcgatacaaagaaagtatgggtt 21402882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 45586519 - 45586690
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||| |   |||||    
T  45586519 agaggtccataatgtttttaaaatggtctccttataagtacctacggttttttccgtaggtaaaggtggaaaacatgcagtgacagtcatct---aatga 45586615  T
Q  124 aagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtag 198  Q
     ||||| |||||||||| |||||||| ||| ||||||| ||||||||| |||||||||| |||||||||||||||    
T  45586616 cagacatatttagctacagaaatttgccctatagtgacagattttggctgtcactaaaaatcaaatttcttgtag 45586690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 31943618 - 31943421
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    ||||||| ||||||||||||||||||||| ||||||| ||| |||| |||| ||| |||||||| | ||||||||||  |||||||||||||||||||||    
T  31943618 agaggtccataatgtttttaaaatggtcttcttagaaatacttacg-ttttgtccgtaggtaaaggaggaaaacatgg-gtgacagtcatttggcaatga 31943521  T
Q  124 aagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgag 223  Q
     | ||| ||||||||||| ||||||||| | ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||| |||||||    
T  31943520 catacaaatttagctacgaaaatttgtcttatagtgacggatattggctgtcactacaagtcaaatttcttgtagcgatacaaagaaaatatcggttgag 31943421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 41 - 250
Target Start/End: Original strand, 24105200 - 24105408
Alignment:
Q  41 ttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctac 140  Q
    |||||||||||||||||||||||| || | |||  ||| |||||||| |||||||||||| |||||||   |||||||||||| |||| |||||||||||    
T  24105200 ttaaaatggtctccttagaattacatatg-tttcgtccgtaggtaaaagtggaaaacatgtagtgacaacaatttggcaatgagagacggatttagctac 24105298  T
Q  141 ggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcatgcccag 240  Q
    ||||||||| ||| |||||||| || | ||| ||||||| || |||||||||||||||||||||||||||||||| ||||||| |||||| | |||||||    
T  24105299 ggaaatttgccctatagtgacgtatatcggctgtcactacaaatcaaatttcttgtagcgatacaaagaaagtatgggttgagtccgggctcgtgcccag 24105398  T
Q  241 gctagctggg 250  Q
     |||| ||||    
T  24105399 actagttggg 24105408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 39 - 271
Target Start/End: Original strand, 53693571 - 53693812
Alignment:
Q  39 ttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagct 138  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||   |||||| |||||   ||||| ||||||||||||||    
T  53693571 ttttaaaatggtctccttagaattacctacg-ttttttccataggtaaatgtggtaaacatg---tgacagccatttaaaaatgacagacagatttagct 53693666  T
Q  139 acggaaatttgtcctgtagtgacgga-ttttggccgtcactaaaagtcaaattt-----------cttgtagcgatacaaagaaagtataggttgaggcc 226  Q
    ||||||||||||||| ||||||| || ||||||  ||||||| |||||||||||           |||||||||||||||||||||||| |||||||  |    
T  53693667 acggaaatttgtcctatagtgacagatttttggttgtcactataagtcaaatttcttgcaaattgcttgtagcgatacaaagaaagtatcggttgagctc 53693766  T
Q  227 gggcgcatgcccaggctagctggg-ggtaaaatcgcccctgctgat 271  Q
    || ||  ||||||||||||||||| |||| || |||||||| ||||    
T  53693767 ggacgtgtgcccaggctagctgggcggtagaaacgcccctgatgat 53693812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 37 - 267
Target Start/End: Complemental strand, 9578331 - 9578101
Alignment:
Q  37 gtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttag 136  Q
    ||||||||||||||||| |||| |||||||| | |||| ||| ||||||||  ||||||||||||| |||||  ||||||  ||||| | | ||||||||    
T  9578331 gtttttaaaatggtctctttagcattacctatg-ttttgtccgtaggtaaagctggaaaacatgcaatgacaaccatttgagaatgacaaatagatttag 9578233  T
Q  137 ctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcatgc 236  Q
    |||||||||||||  || || |||||||||||| | ||||||| ||||||||||||||||||||||||||||||| || |||||||| |||| ||  |||    
T  9578232 ctacggaaatttgctctataatgacggattttgactgtcactataagtcaaatttcttgtagcgatacaaagaaaataaaggttgagcccggacgtgtgc 9578133  T
Q  237 ccaggctagctggg-ggtaaaatcgcccctgc 267  Q
    ||||  |||||||| |||||| || |||||||    
T  9578132 ccagattagctgggtggtaaattcacccctgc 9578101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 3074147 - 3073943
Alignment:
Q  24 agaggtctataatgt-ttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatg 122  Q
    ||||||| ||||||| ||||||||||||||||||||| ||| ||||  ||||||||||| || ||||| ||||||||| ||||||| ||||||| |||||    
T  3074147 agaggtccataatgtattttaaaatggtctccttagatttatctact-ttttttccatatgtgaatgtagaaaacatgtagtgacaatcatttgacaatg 3074049  T
Q  123 aaagacagatttagctacggaaattt-gtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttg 221  Q
    || |||| ||||||||||| |||||| | ||| ||||||  |||||||||  |||||| || |||||||||||||||||||||||| ||||||| |||||    
T  3074048 aa-gacaaatttagctacgaaaattttgccctatagtgatagattttggctatcactataaatcaaatttcttgtagcgatacaaaaaaagtattggttg 3073950  T
Q  222 aggccgg 228  Q
    || ||||    
T  3073949 agcccgg 3073943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 10985183 - 10985356
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    ||||||| ||||||||| ||||||| ||||| ||||||||| || |||||| | | |||||||| |||||||||||||| |||||  ||||||  |||||    
T  10985183 agaggtccataatgtttataaaatgctctccgtagaattacttatggttttgttcgtaggtaaaagtggaaaacatgcactgacaaccatttgagaatga 10985282  T
Q  124 aagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgta 197  Q
     | ||| |||||  |||||||||||  ||| ||| |||||||||||||  ||||||||||||||||||||||||    
T  10985283 catacatatttaattacggaaattttccctatagcgacggattttggctatcactaaaagtcaaatttcttgta 10985356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 12827246 - 12827111
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  ||||||  |||||| || | | |||  |||||||||||  || ||| |||| || |||||||||||||||||||| |    
T  12827246 taggtaaaggtggaaaacatgtcgtgacaaccatttgacactaacagatggatttagctacataattttttcctatattgacggattttggccgtcacaa 12827147  T
Q  180 aaagtcaaatttcttgtagcgatacaaagaaagtat 215  Q
    ||| |||||||| |||||||||||||||||||||||    
T  12827146 aaattcaaatttgttgtagcgatacaaagaaagtat 12827111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 80 - 215
Target Start/End: Original strand, 24974607 - 24974742
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  ||||||| |||||| || ||| |||  |||||||| ||  || ||| |||| || ||||||||||| |||||||| |    
T  24974607 taggtaaaggtggaaaacatgtcgtgacagccatttgacactgacagatggatttagcaacataattttttcctatattgacggattttagccgtcacaa 24974706  T
Q  180 aaagtcaaatttcttgtagcgatacaaagaaagtat 215  Q
    ||| |||||||| |||||||||||||||||||||||    
T  24974707 aaattcaaatttgttgtagcgatacaaagaaagtat 24974742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 56039757 - 56039958
Alignment:
Q  27 ggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaag 126  Q
    ||||| |||| |||||||||| || ||||||||||||||||||||||| ||||||||||||  || |||||||  |||||||  |||||| | |||| |     
T  56039757 ggtctttaatatttttaaaattgtatccttagaattacctacggttttgtccataggtaaagatgtaaaacatagagtgacaaccatttgac-atgacaa 56039855  T
Q  127 acagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatac-aaagaaagtataggttgaggc 225  Q
    || ||||||||||||||||||   ||| || |||||||||| |||  ||| || || | ||||||||||| |  |||| ||| ||||||||||||||| |    
T  56039856 acggatttagctacggaaattaaccctataatgacggatttcggctatcattacaaataaaatttcttgtcgtaatacaaaaaaaagtataggttgagtc 56039955  T
Q  226 cgg 228  Q
    |||    
T  56039956 cgg 56039958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 3650807 - 3650690
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  ||||||| |||||||||  || ||||  ||||||||||  |||||| |||| || |||||||||||||||||||| |    
T  3650807 taggtaaaggtggaaaacatgtcgtgacagccatttggcatcgacagacgaatttagctacataaatttttcctatattgacggattttggccgtcacaa 3650708  T
Q  180 aaagtcaaatttcttgta 197  Q
    ||| |||||||| |||||    
T  3650707 aaattcaaatttgttgta 3650690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 50632962 - 50633079
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  |||||||  |||||||| ||| ||||  ||||||||||  |||||| |||| || |||||||||||||||||||| |    
T  50632962 taggtaaaggtggaaaacatgtcgtgacagctatttggcactgacagacgaatttagctacataaatttttcctatattgacggattttggccgtcacaa 50633061  T
Q  180 aaagtcaaatttcttgta 197  Q
    ||| |||||||| |||||    
T  50633062 aaattcaaatttgttgta 50633079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 4324983 - 4324869
Alignment:
Q  39 ttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtgg-aaaacatgcagtgacagtcatttggcaatgaaagacagatttagc 137  Q
    |||||||||||||| ||||||||||| ||| |||||  || |||||||| |||| |||| ||||| |||||  |||||| | |||| |||   |||||||    
T  4324983 ttttaaaatggtcttcttagaattacatac-gttttgcccgtaggtaaaagtggaaaaatatgcaatgacaaccatttgacgatgacagatgaatttagc 4324885  T
Q  138 tacggaaatttgtcct 153  Q
    ||||||||||| ||||    
T  4324884 tacggaaatttatcct 4324869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 191
Target Start/End: Complemental strand, 54085676 - 54085565
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  ||||||| |||||| |||||| |||| ||||||| |||| || ||| | |  |||||| | |||||| | |||| ||    
T  54085676 taggtaaaggtggaaaacatgttgtgacagccatttgacaatgacagacggatttagttacgaaattttttaccatagtgatgaattttgactgtcagta 54085577  T
Q  180 aaagtcaaattt 191  Q
    ||||| ||||||    
T  54085576 aaagtgaaattt 54085565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 17358702 - 17358673
Alignment:
Q  186 aaatttcttgtagcgatacaaagaaagtat 215  Q
    ||||||||||||||||||||||||||||||    
T  17358702 aaatttcttgtagcgatacaaagaaagtat 17358673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 17358857 - 17358824
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctcctta 57  Q
    ||||||| ||||||||||||||||||||||||||    
T  17358857 agaggtccataatgtttttaaaatggtctcctta 17358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 25106654 - 25106559
Alignment:
Q  35 atgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    ||||||||||||| || |||||||||||  ||||||| |||||| ||| |||| ||| |||||| || ||||||  |||||  |||||| |||||||    
T  25106654 atgtttttaaaatagtatccttagaattgtctacggt-ttttccgtagataaaggtgaaaaacaagcggtgacaaccatttaacaatgatagacaga 25106559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 30822896 - 30822960
Alignment:
Q  203 acaaagaaagtatagg-ttgaggccgggcgcatgcccaggctagctgggggtaaaatcgcccctg 266  Q
    ||||||||||||| || ||||| ||||  ||||||||||||||||||| ||||||  ||||||||    
T  30822896 acaaagaaagtatgggattgagcccggatgcatgcccaggctagctggtggtaaatccgcccctg 30822960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 31410447 - 31410612
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggtttttt-ccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacag 130  Q
    |||||||||| |||||| ||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||| |||||||||||| | | ||||    
T  31410447 ataatgttttaaaaatgatctccttagaattacctacggtttttttccgtaggtaaaggtggaaaacaagcagtgacaatcatttggcaataaca-acag 31410545  T
Q  131 atttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgta 197  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  31410546 atttagctacggaaatttgccctatagtgacagattttggccgtcactaaaattcaaatttcttgta 31410612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 31708874 - 31709053
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||  |||||||| ||||||||| ||||||||||  |  |||||||||| | |  ||    
T  31708874 ataatgtttttaaaatggtctccttagaattacctacg-ttttgtctctaggtaaaggtggaaaacttgcagtgacaaccgcttggcaatgacataagga 31708972  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaag 212  Q
    |||||||||||||||||| ||| ||||||||||||||||  ||||||| || |||||||||||||||||||||||||||||    
T  31708973 tttagctacggaaatttgccctatagtgacggattttggttgtcactacaaatcaaatttcttgtagcgatacaaagaaag 31709053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 27925738 - 27925914
Alignment:
Q  15 cataggtagagaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatt 114  Q
    ||||||||||||  || ||||||||  |||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||  ||||    
T  27925738 cataggtagaga--tccataatgttcataaaatggtctccttagaattacctacg-ttttgtccgtaggtaaatgtggaaaacatgccgtgacaaccatt 27925834  T
Q  115 tggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttctt 194  Q
    || |||||| |||| |||||||||||||||||||| ||| ||||||||| ||||||  || |||| ||||||||||||||    
T  27925835 tgacaatgacagacggatttagctacggaaatttgccctatagtgacggtttttggttgttactacaagtcaaatttctt 27925914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 30547100 - 30546932
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    ||||||| ||||| |||||||||| ||||||||  |||||| |||| |||| ||| |||||||| ||||||||||||||||||||  ||||| |||||||    
T  30547100 agaggtccataatatttttaaaatagtctccttcaaattacttacg-ttttatccgtaggtaaaggtggaaaacatgcagtgacaaccatttcgcaatga 30547002  T
Q  124 aagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttctt 194  Q
     ||||| ||||||||||  ||||||| ||| ||||||||||||||||| |||| || ||||||||||||||    
T  30547001 cagacaaatttagctacataaatttgccct-tagtgacggattttggctgtcattacaagtcaaatttctt 30546932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 24 - 222
Target Start/End: Original strand, 34318528 - 34318724
Alignment:
Q  24 agaggtctataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtc-atttggcaatg 122  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||| ||| |  || ||||||| |||||||||||||  |||||  | |||||||||||    
T  34318528 agaggtccataatgtttttaacatggtctccttataattacctacgttttat--ca-aggtaaaggtggaaaacatgctttgacaaaccatttggcaatg 34318624  T
Q  123 aaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcgatacaaagaaagtataggttga 222  Q
    |  ||  |||||| ||||||||||||   || |||| ||||||||||| |||||||| || ||||||||||| |||| ||||||||||||||| ||||||    
T  34318625 actgatggatttaactacggaaattttctctatagtcacggattttggtcgtcactacaaatcaaatttcttatagcaatacaaagaaagtatgggttga 34318724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 31162175 - 31162289
Alignment:
Q  83 gtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaa 182  Q
    ||||| ||||||||||||  |||||||  ||||||||  || | ||||||||||||||  |||||| |||| || |||||||||||||||||||| ||||    
T  31162175 gtaaaggtggaaaacatgtcgtgacagctatttggcaccgacaaacagatttagctacataaatttttcctatattgacggattttggccgtcacaaaaa 31162274  T
Q  183 gtcaaatttcttgta 197  Q
     |||||||| |||||    
T  31162275 ttcaaatttgttgta 31162289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 28840512 - 28840442
Alignment:
Q  33 taatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcag 103  Q
    ||||||| ||||||| || || ||| | |||||||||||||| ||| |||||||| |||||||||||||||    
T  28840512 taatgttcttaaaatagtatctttaaatttacctacggttttgtccgtaggtaaaggtggaaaacatgcag 28840442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 27925917 - 27925970
Alignment:
Q  186 aaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcatgccca 239  Q
    |||||||||||| ||||||||||||| ||| ||||||| ||| |||||||||||    
T  27925917 aaatttcttgtaacgatacaaagaaaatatgggttgagcccgagcgcatgccca 27925970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 31162289 - 31162318
Alignment:
Q  186 aaatttcttgtagcgatacaaagaaagtat 215  Q
    ||||||||||||||||||||||||||||||    
T  31162289 aaatttcttgtagcgatacaaagaaagtat 31162318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 45467800 - 45467736
Alignment:
Q  186 aaatttcttgtagcgatacaaagaaagtataggttgaggccgggcgcatgcccaggctagctggg 250  Q
    |||||||| | ||||||||||||||||||| ||||||| |||  ||| |||| | ||||||||||    
T  45467800 aaatttctcgaagcgatacaaagaaagtatgggttgagcccgtacgcgtgcctatgctagctggg 45467736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 17137 - 16980
Alignment:
Q  32 ataatgtttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacaga 131  Q
    ||||||| ||||||||||| |||||| |||||| |||| |||| ||| ||| |||| || ||||||||||| | |||  ||||||| ||| | |  || |    
T  17137 ataatgtatttaaaatggtatccttaaaattacatacg-ttttgtccgtagataaaggtagaaaacatgcaattacaaccatttggtaatcacaaccaaa 17039  T
Q  132 tttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatt 190  Q
    ||||| |||||||||||||||| ||||||||||||||||  ||||||  ||||||||||    
T  17038 tttagttacggaaatttgtcctttagtgacggattttggttgtcactgtaagtcaaatt 16980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 559 - 446
Alignment:
Q  102 agtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttgtagcga 201  Q
    |||||||  |||||| |||||| |||   |||||||||| |||||||  ||| || | ||||||||||||||||| ||||||| ||||||||||||| ||    
T  559 agtgacaaccatttgacaatgacagatgaatttagctacagaaattttccctatattaacggattttggccgtcagtaaaagttaaatttcttgtagtga 460  T
Q  202 tacaaagaaagtat 215  Q
    ||||||||||||||    
T  459 tacaaagaaagtat 446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 13115 - 12998
Alignment:
Q  80 taggtaaatgtggaaaacatgcagtgacagtcatttggcaatgaaagacagatttagctacggaaatttgtcctgtagtgacggattttggccgtcacta 179  Q
    |||||||| ||||||||||||  ||||||| |||||| || ||| ||||  ||||||||||  |||||| |||| || ||||| |||||||||||||| |    
T  13115 taggtaaaggtggaaaacatgtcgtgacagccatttgtcactgacagacgaatttagctacataaatttttcctatattgacgtattttggccgtcacaa 13016  T
Q  180 aaagtcaaatttcttgta 197  Q
    ||| |||||||| |||||    
T  13015 aaattcaaatttgttgta 12998  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 435735 - 435819
Alignment:
Q  39 ttttaaaatggtctccttagaattacctacggttttttccataggtaaatgtggaaaacatgcagtgacagtcatttggcaatga 123  Q
    |||||||||||| |||||| |||||||||| ||||| ||| |||||||| ||||||||| |||| | |||  |||||| ||||||    
T  435735 ttttaaaatggtatccttaaaattacctacagttttgtccgtaggtaaaggtggaaaacgtgcaattacaaccatttgacaatga 435819  T

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