View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15798_high_5 (Length: 317)
Name: NF15798_high_5
Description: NF15798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15798_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 4757640 - 4757342
Alignment:
| Q |
1 |
tcatcattgcgaagtattccccgactttaccgatgattaatttctgaaggaaattcgaccgattacctttaatgagatctttccttctaacaannnnnnn |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4757640 |
tcatcattgtgaagtattccccgactttaccgatgattaatttctgaaggaaattcgaccgattacctttaatgatatctttccttctaacaaatttttt |
4757541 |
T |
|
| Q |
101 |
nnnnnatccataaaattcaacctaagatcttatttaaaagaaaggacagaaatctgagtcaagttccattcaaccgatatacttagttgataaattcaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4757540 |
ttt--atccataaaattcaacctaagatcttatttaaaagaaaggacagaaatctgagtcaagttccattcaaccgatatacttagttgataaattcaat |
4757443 |
T |
|
| Q |
201 |
atcattattactagctacataatttatttgcggtctctatgatgcatggcatggtgtgacattgataaatacgtgtacatgtcttaccctctggagcggt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4757442 |
atcattattactagctacataatttatttgcggtctctatgatgcatggcatggtgtgacattgacaaatacgtgtacatgtcttaccctctggagcggt |
4757343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University