View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15798_low_1 (Length: 522)
Name: NF15798_low_1
Description: NF15798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15798_low_1 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Complemental strand, 12934148 - 12933645
Alignment:
| Q |
19 |
aaaggattttgacaattccttcttcaaatctccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934148 |
aaaggattttgacaattccttcttcaaatcaccaatcatatccttgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttg |
12934049 |
T |
|
| Q |
119 |
ttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934048 |
ttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttg |
12933949 |
T |
|
| Q |
219 |
gtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933948 |
gtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttc |
12933849 |
T |
|
| Q |
319 |
atctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933848 |
atctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatc |
12933749 |
T |
|
| Q |
419 |
ttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933748 |
ttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccat |
12933649 |
T |
|
| Q |
519 |
cttt |
522 |
Q |
| |
|
|||| |
|
|
| T |
12933648 |
cttt |
12933645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 28893876 - 28893839
Alignment:
| Q |
326 |
tctccatgaagaaatgcagtctttacatccatttgttc |
363 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
28893876 |
tctccatgtagaaatgcagtcttcacatccatttgttc |
28893839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Complemental strand, 14177418 - 14176915
Alignment:
| Q |
19 |
aaaggattttgacaattccttcttcaaatctccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177418 |
aaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttg |
14177319 |
T |
|
| Q |
119 |
ttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14177318 |
ttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcgaatttcttataccattgtcttg |
14177219 |
T |
|
| Q |
219 |
gtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177218 |
gtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttc |
14177119 |
T |
|
| Q |
319 |
atctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14177118 |
atctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaactaatccgagtataactcgaattgaactcatc |
14177019 |
T |
|
| Q |
419 |
ttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177018 |
ttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccat |
14176919 |
T |
|
| Q |
519 |
cttt |
522 |
Q |
| |
|
|||| |
|
|
| T |
14176918 |
cttt |
14176915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Original strand, 28608457 - 28608960
Alignment:
| Q |
19 |
aaaggattttgacaattccttcttcaaatctccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28608457 |
aaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaatgatgatgaatttg |
28608556 |
T |
|
| Q |
119 |
ttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608557 |
ttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttg |
28608656 |
T |
|
| Q |
219 |
gtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28608657 |
gtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttcttaaatccttctggttgaaccatgtagatctcttc |
28608756 |
T |
|
| Q |
319 |
atctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28608757 |
atctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaactaatccgagtataactcgaattgaactcatc |
28608856 |
T |
|
| Q |
419 |
ttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608857 |
ttaacaactggagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcaccat |
28608956 |
T |
|
| Q |
519 |
cttt |
522 |
Q |
| |
|
|||| |
|
|
| T |
28608957 |
cttt |
28608960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 285 - 360
Target Start/End: Original strand, 6802395 - 6802470
Alignment:
| Q |
285 |
caaatccttctggttgaaccatgtagatctcttcatctaaatctcca-tgaagaaatgcagtctttacatccatttg |
360 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||| |||||||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
6802395 |
caaaaccttctggttgatccatgtagatttcttcctctaaatctccatttaagaaa-gcagtctttacatccatttg |
6802470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 30947249 - 30947317
Alignment:
| Q |
286 |
aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatc |
354 |
Q |
| |
|
||||||||| ||||||| ||| || || ||||| || | |||||||||||||| |||||||||||||| |
|
|
| T |
30947249 |
aaatccttccggttgaagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatc |
30947317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 20 - 522
Target Start/End: Complemental strand, 15299933 - 15299435
Alignment:
| Q |
20 |
aaggattttgacaattccttcttcaaatctccaatcatatcctcgtcttgccccactatcaacatatcatctacatataacagaaggatgatgaatttgt |
119 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15299933 |
aaggattttgacaattcatttttcaaatcaccaatcatatcctcgtcttgccccactatcaacttatcatctacatataacagaaggatgataaatttgt |
15299834 |
T |
|
| Q |
120 |
tacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtcaaatttcttataccattgtcttgg |
219 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15299833 |
tacctcgaaatattttgacatatacacaatgatctgcatctgtcttggtatattcatgactcatcatgaacgagtaaaatttcttataccattgtcttgg |
15299734 |
T |
|
| Q |
220 |
tgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttca |
319 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299733 |
tgcttgtcttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctcaaatccttctggttgaaccatgtagatctcttca |
15299634 |
T |
|
| Q |
320 |
tctaaatctccatgaagaaatgcagtctttacatccatttgttcaagctccaaatccaagctagcaaccaatccgagtataactcgaattgaactcatct |
419 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299633 |
tctaaatatccatgaag------agtctttacgtccatttgttcaagctccaaacccaagctagcaaccaatccgagtataactcgaattgaactcatct |
15299540 |
T |
|
| Q |
420 |
taacaactg--gagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagcgagctttgtacttcactagcttgtcacca |
517 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | |
|
|
| T |
15299539 |
taacaactggagagagaagatttcatcaaaatctattcctcgcttttgtccaaaaccttttacgactaagagagctttgtatttcactagcttgtcacta |
15299440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 6692255 - 6692200
Alignment:
| Q |
194 |
tcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttctt |
249 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
6692255 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
6692200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 796566 - 796621
Alignment:
| Q |
194 |
tcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttctt |
249 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
796566 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
796621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 8273261 - 8273206
Alignment:
| Q |
194 |
tcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttctt |
249 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
8273261 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
8273206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 19944205 - 19944150
Alignment:
| Q |
194 |
tcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttctt |
249 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
19944205 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
19944150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 366
Target Start/End: Complemental strand, 34355221 - 34355181
Alignment:
| Q |
326 |
tctccatgaagaaatgcagtctttacatccatttgttcaag |
366 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
34355221 |
tctccatgaagaaaagcagtctttacatccagctgttcaag |
34355181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 50060116 - 50060080
Alignment:
| Q |
303 |
ccatgtagatctcttcatctaaatctccatgaagaaa |
339 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50060116 |
ccatgtagatctcttcctctaaatctccatgaagaaa |
50060080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 366
Target Start/End: Complemental strand, 828690 - 828650
Alignment:
| Q |
326 |
tctccatgaagaaatgcagtctttacatccatttgttcaag |
366 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
828690 |
tctccatgaagaaaagcagtctttacatccagctgttcaag |
828650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University