View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15798_low_2 (Length: 520)
Name: NF15798_low_2
Description: NF15798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15798_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 416 - 504
Target Start/End: Complemental strand, 43164519 - 43164431
Alignment:
| Q |
416 |
ggttatgaaattcattaatatgattgaagactataaaaagttaaagtgaaaactactaaactaaaggatgatcaacatatgtatttcat |
504 |
Q |
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| T |
43164519 |
ggttatgaaatttattaatatgattgaagactataaaaagttaaagtgaaaactactaaactaaaggatgatcaacatatgtatttcat |
43164431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 15298577 - 15298716
Alignment:
| Q |
206 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
305 |
Q |
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| T |
15298577 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacataaccattatggagaaagtgagatgtatgctgaaaa |
15298676 |
T |
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| Q |
306 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
345 |
Q |
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| T |
15298677 |
tggctaagctgccaaagccattttggggtgaagctgttca |
15298716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 7327742 - 7327782
Alignment:
| Q |
18 |
gatttcaattatgaatggaattcttggaggtttgtgttttg |
58 |
Q |
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| T |
7327742 |
gatttcaattatgaatggaattcttggaggtttgtgttttg |
7327782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 7306651 - 7306611
Alignment:
| Q |
18 |
gatttcaattatgaatggaattcttggaggtttgtgttttg |
58 |
Q |
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| T |
7306651 |
gatttcaattataaatcgaattcttggaggttcgtgttttg |
7306611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 14176057 - 14176196
Alignment:
| Q |
206 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
305 |
Q |
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| T |
14176057 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
14176156 |
T |
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| Q |
306 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
345 |
Q |
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| T |
14176157 |
tggctaagctgccaaagccattttggggagaagctgttca |
14176196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 28609820 - 28609681
Alignment:
| Q |
206 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
305 |
Q |
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| T |
28609820 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
28609721 |
T |
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| Q |
306 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
345 |
Q |
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| T |
28609720 |
tggctaagctgccaaagccattttggggagaagctgttca |
28609681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 12932787 - 12932926
Alignment:
| Q |
206 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
305 |
Q |
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||||||||||| ||||| |||||||| |||||||| || ||||| ||||| || || || ||| | |||||| ||||||| |||||| | ||||| | || |
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| T |
12932787 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
12932886 |
T |
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| Q |
306 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
345 |
Q |
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||||||| ||||| ||| |||| |||| ||||| ||||| |
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| T |
12932887 |
tggctaagctgccaaagccattttgggtagaagctgttca |
12932926 |
T |
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