View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15798_low_3 (Length: 500)

Name: NF15798_low_3
Description: NF15798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15798_low_3
NF15798_low_3
[»] chr8 (11 HSPs)
chr8 (313-486)||(45547454-45547627)
chr8 (6-212)||(45531373-45531584)
chr8 (6-203)||(23136651-23136856)
chr8 (236-321)||(45547376-45547461)
chr8 (6-121)||(23160795-23160913)
chr8 (17-129)||(8351403-8351518)
chr8 (17-129)||(17890663-17890778)
chr8 (87-129)||(19742782-19742824)
chr8 (87-129)||(45250848-45250890)
chr8 (17-129)||(35136919-35137034)
chr8 (17-120)||(25064194-25064300)
[»] scaffold0059 (2 HSPs)
scaffold0059 (6-203)||(66920-67117)
scaffold0059 (6-203)||(75025-75222)
[»] chr3 (7 HSPs)
chr3 (6-203)||(20919454-20919651)
chr3 (6-203)||(20928416-20928613)
chr3 (6-125)||(37198063-37198183)
chr3 (12-129)||(2765786-2765906)
chr3 (144-203)||(37198007-37198069)
chr3 (12-129)||(50246366-50246486)
chr3 (17-129)||(20783815-20783930)
[»] chr6 (3 HSPs)
chr6 (6-203)||(1607703-1607903)
chr6 (6-183)||(11550470-11550650)
chr6 (6-177)||(4856635-4856809)
[»] chr2 (5 HSPs)
chr2 (13-203)||(41747554-41747750)
chr2 (87-129)||(16139518-16139560)
chr2 (17-129)||(20103739-20103854)
chr2 (87-129)||(24971993-24972035)
chr2 (142-199)||(16311472-16311529)
[»] chr5 (1 HSPs)
chr5 (6-183)||(9662767-9662947)
[»] chr4 (2 HSPs)
chr4 (141-203)||(35648158-35648220)
chr4 (17-129)||(14252977-14253092)
[»] scaffold0155 (1 HSPs)
scaffold0155 (6-129)||(26886-27011)
[»] chr1 (1 HSPs)
chr1 (6-129)||(45915205-45915330)
[»] scaffold0216 (1 HSPs)
scaffold0216 (87-129)||(18275-18317)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 313 - 486
Target Start/End: Complemental strand, 45547627 - 45547454
Alignment:
Q  313 tcaaaggatgctaggatgcacaacataccagaagttgatgaggtggcagctctaattgtcggagatactgacagtatagaatatggaagtgatattatcg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  45547627 tcaaaggatgctaggatgcacaacataccagaagttgatgaggtggcagctctaattgtcggagatactgacagtatagaatatggaagagatattatca 45547528  T
Q  413 ttagaaaggaatcaggtcatttggaaagacttcatgagacacatacttcctttattccattacaatatcctttg 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45547527 ttagaaaggaatcaggtcatttggaaagacttcatgagacacatacttcctttattccattacaatatcctttg 45547454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 45531373 - 45531584
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacac-aaaaatgaaatcaactccataatct 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  45531373 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaatcaactccataatct 45531472  T
Q  105 acaaccaagtgattaaacttctatg----nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatgga 200  Q
    |||||||||||||||||||||||||             |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||    
T  45531473 acaaccaagtgattaaacttctatgtttttttttttttacaaaaaacttccatgcttttaaaacacataaaatactttctcttatgaatttgtttatgga 45531572  T
Q  201 ggataaagagat 212  Q
    ||| ||||||||    
T  45531573 ggagaaagagat 45531584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 23136856 - 23136651
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca-aaaatgaaatcaactccataatct 104  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||| |||||||||||| ||||| |||||||| ||| |||||    
T  23136856 gtcgaataatatagacacatgctcttcaatgggatcctgagaaagtagaattaacaattaacaataagatacacaaaaaataaaatcaaccccaaaatct 23136757  T
Q  105 acaaccaagtgattaaacttctatg--nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatac-----tttcttttatgaatttgtttat 197  Q
    |||||||||||||||||||||||||           |||||||||||||||||||||||||||||| | ||||     ||| ||||||||||||||||||    
T  23136756 acaaccaagtgattaaacttctatgttgttttgtttacaaaaaacttccatgcttttaaaacacagaatatactttttttttttttatgaatttgtttat 23136657  T
Q  198 ggagga 203  Q
    ||||||    
T  23136656 ggagga 23136651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 236 - 321
Target Start/End: Original strand, 45547376 - 45547461
Alignment:
Q  236 agtacggtctggattggcttcctccttttcacttattttaatattttcagagaaaccatcttcaccgtaaggaaagatcaaaggat 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45547376 agtacggtctggattggcttcctccttttcacttattttaatattttcagagaaaccatcttcaccgtaaggaaagatcaaaggat 45547461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 23160795 - 23160913
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacac---aaaaatgaaatcaactccataat 102  Q
    ||||||||||  ||||||||||||| |||||| | | |||||||||| ||||| | || ||| || ||||||||   |||||| |||||| | |||||||    
T  23160795 gtcgaagaatggagacacatgctctccaatggaaccttgagaaagtagaattagcaataaacaattagatacacataaaaaataaaatcagccccataat 23160894  T
Q  103 ctacaaccaagtgattaaa 121  Q
    |||||||||| ||||||||    
T  23160895 ctacaaccaattgattaaa 23160913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 8351518 - 8351403
Alignment:
Q  17 tagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca---aaaatgaaatcaactccataatctacaaccaag 113  Q
    |||||||||||||| |||||| | | ||||||||||  |||||| || ||| || ||||||| |   ||||  ||||||||  |||||||||||||||||    
T  8351518 tagacacatgctctccaatggaaccttgagaaagtagcattaacaataaacaattagatacaaataaaaaagaaaatcaacctcataatctacaaccaag 8351419  T
Q  114 tgattaaacttctatg 129  Q
    ||||||| ||| ||||    
T  8351418 tgattaatcttatatg 8351403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 17890663 - 17890778
Alignment:
Q  17 tagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca---aaaatgaaatcaactccataatctacaaccaag 113  Q
    |||||||||||||| |||||| | | | ||||||||  |||||| || ||| || ||||||| |   ||||  |||||||| ||||||||||||||||||    
T  17890663 tagacacatgctctccaatggaaccctaagaaagtagcattaacaataaacaattagatacaaataaaaaagaaaatcaaccccataatctacaaccaag 17890762  T
Q  114 tgattaaacttctatg 129  Q
    ||||||| ||| ||||    
T  17890763 tgattaatcttatatg 17890778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 19742824 - 19742782
Alignment:
Q  87 aaatcaactccataatctacaaccaagtgattaaacttctatg 129  Q
    |||||||| ||||||||||||||||||||||||| ||| ||||    
T  19742824 aaatcaaccccataatctacaaccaagtgattaatcttatatg 19742782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 45250848 - 45250890
Alignment:
Q  87 aaatcaactccataatctacaaccaagtgattaaacttctatg 129  Q
    |||||||| | ||||||||||||||| ||||||||||||||||    
T  45250848 aaatcaaccctataatctacaaccaaatgattaaacttctatg 45250890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 35137034 - 35136919
Alignment:
Q  17 tagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca---aaaatgaaatcaactccataatctacaaccaag 113  Q
    ||||||| |||||| |||||| | | ||||||||||  |||||| || ||| || ||||||| |   ||||  |||||||| |||| |||||||||||||    
T  35137034 tagacacgtgctctccaatggaaccctgagaaagtagcattaacaataaacaattagatacaaataaaaaagaaaatcaaccccatgatctacaaccaag 35136935  T
Q  114 tgattaaacttctatg 129  Q
    ||||||| ||| ||||    
T  35136934 tgattaatcttatatg 35136919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 25064300 - 25064194
Alignment:
Q  17 tagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca---aaaatgaaatcaactccataatctacaaccaag 113  Q
    |||||||||||||| |||||| | | ||| ||||||  |||||| || ||| || ||||||| |   ||||| |||||||| |||||||  |||||||||    
T  25064300 tagacacatgctctccaatggaaccctgataaagtagcattaacaataaacaattagatacaaataaaaaataaaatcaaccccataattgacaaccaag 25064201  T
Q  114 tgattaa 120  Q
    |||||||    
T  25064200 tgattaa 25064194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 66920 - 67117
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacac-aaaaatgaaatcaactccataatct 104  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||||    
T  66920 gtcgaagaatatagacacatcctcttcaatgggatcctgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaattaactccataatct 67019  T
Q  105 acaaccaagtgattaaacttctatgnnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatggagga 203  Q
    ||||||||||||||||||||| |||         |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  67020 acaaccaagtgattaaacttccatg-tttttttcacaaaaaacttccatgcttttaaaacacagaaaatactttcttttatgaatttgtttatggagga 67117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 75025 - 75222
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacac-aaaaatgaaatcaactccataatct 104  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||||    
T  75025 gtcgaagaatatagacacatcctcttcaatgggatcctgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaattaactccataatct 75124  T
Q  105 acaaccaagtgattaaacttctatgnnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatggagga 203  Q
    ||||||||||||||||||||| |||         |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  75125 acaaccaagtgattaaacttccatg-tttttttcacaaaaaacttccatgcttttaaaacacagaaaatactttcttttatgaatttgtttatggagga 75222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 9e-68; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 20919651 - 20919454
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca-aaaatgaaatcaactccataatct 104  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||    
T  20919651 gtcgaagaatatagacacatcctcttcaatgggatcctgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaattaactccataatct 20919552  T
Q  105 acaaccaagtgattaaacttctatgnnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatggagga 203  Q
    ||||||||||||||||||||| |||         |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20919551 acaaccaagtgattaaacttccatg-tttttttcacaaaaaacttccatgcttttaaaacacagaaaatactttcttttatgaatttgtttatggagga 20919454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 20928613 - 20928416
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca-aaaatgaaatcaactccataatct 104  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||    
T  20928613 gtcgaagaatatagacacatcctcttcaatgggatcctgagaaagtaaaattaacgattaacaataagatacacaaaaaataaaattaactccataatct 20928514  T
Q  105 acaaccaagtgattaaacttctatgnnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatggagga 203  Q
    ||||||||||||||||||||| |||         |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20928513 acaaccaagtgattaaacttccatg-tttttttcacaaaaaacttccatgcttttaaaacacagaaaatactttcttttatgaatttgtttatggagga 20928416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 37198183 - 37198063
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca-aaaatgaaatcaactccataatct 104  Q
    |||||| |||||||||||||||||||||||||| || |||||||||| ||||||| |||||| |||||||||||| ||||| |||| |||  |||||| |    
T  37198183 gtcgaataatatagacacatgctcttcaatgggttcctgagaaagtagaattaacaattaacaataagatacacaaaaaataaaataaacctcataatat 37198084  T
Q  105 acaaccaagtgattaaacttc 125  Q
    |||||||||||||||||||||    
T  37198083 acaaccaagtgattaaacttc 37198063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 2765786 - 2765906
Alignment:
Q  12 gaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagataca---caaaaatgaaatcaactccataatctacaa 108  Q
    |||| |||||||||||||| |||||||| | |||||||||| ||| ||| |||||| || |||||||    |||||  |||||||| | ||||| |||||    
T  2765786 gaatgtagacacatgctctccaatgggaccctgagaaagtagaatcaacaattaacaattagatacaaataaaaaagaaaatcaaccctataatttacaa 2765885  T
Q  109 ccaagtgattaaacttctatg 129  Q
    |||| ||||||||||||||||    
T  2765886 ccaaatgattaaacttctatg 2765906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 37198069 - 37198007
Alignment:
Q  144 aaacttccatgcttttaaaacacaggaaatac---tttcttttatgaatttgtttatggagga 203  Q
    ||||||||||||||||||||||||| ||||||   ||| ||||||||||||||||||||||||    
T  37198069 aaacttccatgcttttaaaacacagaaaatactttttttttttatgaatttgtttatggagga 37198007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 50246366 - 50246486
Alignment:
Q  12 gaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca---aaaatgaaatcaactccataatctacaa 108  Q
    ||||||||| ||||||||| |||| ||||| ||||||||||  || ||| |||||| || ||||||| |   ||||  |||||||| | ||||| |||||    
T  50246366 gaatatagaaacatgctctccaataggatcctgagaaagtagcatcaacaattaacaattagatacaaataaaaaagaaaatcaaccctataatttacaa 50246465  T
Q  109 ccaagtgattaaacttctatg 129  Q
    | || ||||||||||||||||    
T  50246466 ctaaatgattaaacttctatg 50246486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 20783815 - 20783930
Alignment:
Q  17 tagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca---aaaatgaaatcaactccataatctacaaccaag 113  Q
    |||||||||||||| |||||  | | ||||||||||  |||||| || ||| || ||||||| |   ||||  ||||||||  |||||||||||||||||    
T  20783815 tagacacatgctctccaatgaaaccctgagaaagtagcattaacaataaacaattagatacaaataaaaaagaaaatcaacctcataatctacaaccaag 20783914  T
Q  114 tgattaaacttctatg 129  Q
    ||||||| ||| ||||    
T  20783915 tgattaatcttatatg 20783930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 6e-63; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 1607703 - 1607903
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacac-aaaaatgaaatcaactccataatct 104  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |||||| |||||||| |||||||||    
T  1607703 gtcgaataatatagacacatgctcttcaatgggatcctgagaaagtagaattaacgattaacaataagatacacaaaaaataaaatcaaccccataatct 1607802  T
Q  105 acaaccaagtgattaaacttctatg--nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatggagg 202  Q
    |||||||||||||||||||||||||           |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  1607803 acaaccaagtgattaaacttctatgtttttttgtttacaaaaaacttccatgcttttaaaacacagaaaatacttttttttatgaatttgtttatggagg 1607902  T
Q  203 a 203  Q
    |    
T  1607903 a 1607903  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 11550650 - 11550470
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca-aaaatgaaatcaactccataatct 104  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||| ||||| |||||||| ||| |||||    
T  11550650 gtcgaataatatagacacatgctcctcaatgggatcctgagaaagtagaattaacgattaacaataagatacacaaaaaataaaatcaaccccaaaatct 11550551  T
Q  105 acaaccaagtgattaaacttctatg--nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttctttt 183  Q
    |||||||| ||||||||||||||||           |||||||||||||||||||||||||||||| | ||||||| ||||    
T  11550550 acaaccaaatgattaaacttctatgttttttttttaacaaaaaacttccatgcttttaaaacacagaatatactttttttt 11550470  T

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Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 4856635 - 4856809
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacac-aaaaatgaaatcaactccataatct 104  Q
    |||||| |||||||||||||||||  |||||||||| |||||||||| |||||||||||||| ||||||||||| |||||| |||||||| ||| |||||    
T  4856635 gtcgaataatatagacacatgctccacaatgggatcctgagaaagtagaattaacgattaacaataagatacacaaaaaataaaatcaaccccaaaatct 4856734  T
Q  105 acaaccaagtgattaaacttctatg--nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactt 177  Q
    |||||||| ||||||||||| ||||           |||||||||||||||||||||||||||||| | ||||||    
T  4856735 acaaccaaatgattaaacttttatgtttttttgtttacaaaaaacttccatgcttttaaaacacagaatatactt 4856809  T

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Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 41747750 - 41747554
Alignment:
Q  13 aatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca-aaaatgaaatcaactccataatctacaacca 111  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| ||||| |||||||| ||| ||||||||||||    
T  41747750 aatatagacacatgctcttcaatgggatcctgagaaagtagaattaacgattaacaataagatacacaaaaaataaaatcaaccccaaaatctacaacca 41747651  T
Q  112 agtgattaaacttctatg--nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatac---tttcttttatgaatttgtttatggagga 203  Q
    ||||||||||||||||||           |||||||||||||||||||||||||||||| | ||||   ||| ||||||||||||||||||||||||    
T  41747650 agtgattaaacttctatgtttttttgtttacaaaaaacttccatgcttttaaaacacagaatatactttttttttttatgaatttgtttatggagga 41747554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 16139560 - 16139518
Alignment:
Q  87 aaatcaactccataatctacaaccaagtgattaaacttctatg 129  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  16139560 aaatcaactccataatctacaaccaagtgattaaacttatatg 16139518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 20103854 - 20103739
Alignment:
Q  17 tagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca---aaaatgaaatcaactccataatctacaaccaag 113  Q
    |||||||||||||| |||||| | | ||||||||||  |||||| || ||| || ||||||| |   ||||  ||||||||  |||||||||||||||||    
T  20103854 tagacacatgctctccaatggaaccctgagaaagtagcattaacaataaacaattagatacaaataaaaaagaaaatcaaccacataatctacaaccaag 20103755  T
Q  114 tgattaaacttctatg 129  Q
    ||||||| ||| ||||    
T  20103754 tgattaatcttatatg 20103739  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 24971993 - 24972035
Alignment:
Q  87 aaatcaactccataatctacaaccaagtgattaaacttctatg 129  Q
    |||||||| | ||||||||||||||| ||||||||||||||||    
T  24971993 aaatcaaccctataatctacaaccaaatgattaaacttctatg 24972035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 16311472 - 16311529
Alignment:
Q  142 aaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatgg 199  Q
    |||| |||||||||||||||||||||  |||||| || ||||||||| || |||||||    
T  16311472 aaaatcttccatgcttttaaaacacataaaatacctttttttatgaaattttttatgg 16311529  T

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Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 9662767 - 9662947
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagataca-caaaaatgaaatcaactccataatct 104  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||||||||  |||||| ||||||||  ||||||||    
T  9662767 gtcgaataatatagacacctgctcttcaatgggatcctgagaaagtagaattaacgattaacaataagatacataaaaaataaaatcaaccacataatct 9662866  T
Q  105 acaaccaagtgattaaacttctatg--nnnnnnnnnacaaaaaacttccatgcttttaaaacacaggaaatactttctttt 183  Q
    |||||||||||||| ||||||||||           ||||||||| ||||||||||||||||| || ||||||||||||||    
T  9662867 acaaccaagtgatttaacttctatgtttttttgtttacaaaaaacatccatgcttttaaaacatagaaaatactttctttt 9662947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 35648220 - 35648158
Alignment:
Q  141 aaaaaacttccatgcttttaaaacacaggaaatactttcttttatgaatttgtttatggagga 203  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  35648220 aaaaaacttccatgcttttaaaacacagaaaattctttcttttatgaatttgtttatggagga 35648158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 14252977 - 14253092
Alignment:
Q  17 tagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagatacaca---aaaatgaaatcaactccataatctacaaccaag 113  Q
    |||||||||||||| |||||| | | ||||||||||  |||||| || ||| || ||||||| |   ||||  |||||||| ||||||||||||||||||    
T  14252977 tagacacatgctctccaatggaaccctgagaaagtagcattaacaataaacaattagatacaaataaaaaagaaaatcaaccccataatctacaaccaag 14253076  T
Q  114 tgattaaacttctatg 129  Q
    ||||||| ||| ||||    
T  14253077 tgattaatcttatatg 14253092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 27011 - 26886
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagataca---caaaaatgaaatcaactccataat 102  Q
    |||| ||||| |||||||||||||| |||||||| | ||||||||| | || ||| |||||| || |||||||    |||||  |||||||| | |||||    
T  27011 gtcgtagaatgtagacacatgctctccaatgggaccctgagaaagt-acatcaacaattaacaattagatacaaataaaaaagaaaatcaaccctataat 26913  T
Q  103 ctacaaccaagtgattaaacttctatg 129  Q
    |||||||||| |||||||| |||||||    
T  26912 ctacaaccaaatgattaaatttctatg 26886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 45915330 - 45915205
Alignment:
Q  6 gtcgaagaatatagacacatgctcttcaatgggatcatgagaaagtaaaattaacgattaactataagataca---caaaaatgaaatcaactccataat 102  Q
    |||| ||||| |||||||||||||| |||||||| | ||||||||| | || ||| |||||| || |||||||    |||||  |||||||||  |||||    
T  45915330 gtcgtagaatgtagacacatgctctccaatgggaccctgagaaagt-acatcaacaattaacaattagatacaaataaaaaagaaaatcaactgtataat 45915232  T
Q  103 ctacaaccaagtgattaaacttctatg 129  Q
    |||||||||| ||||||||||| ||||    
T  45915231 ctacaaccaaatgattaaacttttatg 45915205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 18317 - 18275
Alignment:
Q  87 aaatcaactccataatctacaaccaagtgattaaacttctatg 129  Q
    |||||||| | ||||||||||||||| ||||||||||||||||    
T  18317 aaatcaaccctataatctacaaccaaatgattaaacttctatg 18275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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