View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15798_low_5 (Length: 398)
Name: NF15798_low_5
Description: NF15798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15798_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 47116963 - 47116595
Alignment:
| Q |
1 |
atcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaatt |
100 |
Q |
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| T |
47116963 |
atcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaatt |
47116864 |
T |
|
| Q |
101 |
acctgagaagcgatgaaacaaaacaatgtcagnnnnnnngagatatcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatcta |
200 |
Q |
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| T |
47116863 |
acctgagaagcgatgaaacaaaacaatgtcagaaaaaaagagatatcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatcta |
47116764 |
T |
|
| Q |
201 |
ttgtggaaggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtggaaattttctttgtaactgtctccccgaactttcagtaa |
300 |
Q |
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| T |
47116763 |
ttgtggaaggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtggaacttttctttgtaactgtctccccgaactttcagtaa |
47116664 |
T |
|
| Q |
301 |
ttaataccacaattagcacaaataatttctttcattttctctttccttaccagttttccaccaaataat |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47116663 |
ttaataccacaattagcacaaataatttctttcattttctctttccttaccagttttccaccaaataat |
47116595 |
T |
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