View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15798_low_6 (Length: 397)
Name: NF15798_low_6
Description: NF15798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15798_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 7375335 - 7375717
Alignment:
| Q |
12 |
gaagaatatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggaggaaggaattgaggaaagtgtggatgtgaaagaaga---------- |
101 |
Q |
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| T |
7375335 |
gaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggaggaaggaattaaggaaagtgtagatgtgaaagaagaggagggtaga |
7375434 |
T |
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| Q |
102 |
-----aaatggatttgaggaggttaagg------aggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatgg |
190 |
Q |
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| T |
7375435 |
attggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgagaagatgatgg |
7375534 |
T |
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| Q |
191 |
aaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatctctcacacaaagggtggagcagcttgagagagcttttacttttga |
290 |
Q |
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| T |
7375535 |
aaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatctcttacacaaagagtggagcagcttgagagagcttttacttttga |
7375634 |
T |
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| Q |
291 |
caagttgaggaggaagaataagaagaggaggaatcttgatgccaaacacagacataatggttgcatttgatgacttttgcttt |
373 |
Q |
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| T |
7375635 |
caagttgaggaggaagaataagaagaggaggaatgttgatgccaaacacagacataatggttgcatttgatgacttttgcttt |
7375717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 373
Target Start/End: Complemental strand, 7278504 - 7278122
Alignment:
| Q |
12 |
gaagaatatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggaggaaggaattgaggaaagtgtggatgtgaaagaaga---------- |
101 |
Q |
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| T |
7278504 |
gaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggaggaaggaattaaggaaagtgtagatgtgaaagaagaggagggtaga |
7278405 |
T |
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| Q |
102 |
-----aaatggatttgaggaggttaagg------aggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatgg |
190 |
Q |
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| T |
7278404 |
attggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgagaagatgatgg |
7278305 |
T |
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| Q |
191 |
aaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatctctcacacaaagggtggagcagcttgagagagcttttacttttga |
290 |
Q |
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| T |
7278304 |
aaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatctcttacacaaagagtggagcagcttgagagagcatttacttttga |
7278205 |
T |
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| Q |
291 |
caagttgaggaggaagaataagaagaggaggaatcttgatgccaaacacagacataatggttgcatttgatgacttttgcttt |
373 |
Q |
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| T |
7278204 |
caagttgaggaggaagaataagaagaggaggaatgttgatgccaaacacagacataatggttgcatttgatgacttttgcttt |
7278122 |
T |
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