View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15798_low_8 (Length: 340)
Name: NF15798_low_8
Description: NF15798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15798_low_8 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 91638 - 91326
Alignment:
| Q |
14 |
agaaggtttgaaggtaactaacaacataggctatgaataacataatttgataataagctttcacnnnnnnnnnnnnnnnnn-----gcaagttaatacag |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
91638 |
agaaggtttgaaggtaactaacaacataggctatgaatagcataatttgataataagctttcaccaaaaaaaaaaaaaaaaaaaaagcaagttaatacag |
91539 |
T |
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| Q |
109 |
gtaaatttaatttccatggtgtttcagtgttgtttactattatcaatgtttcctccagcaattgtgggggaaaagatggaaccggaaaggttatatgatt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
91538 |
gtaaatttaatttccatggtgtttcagtgttgtttactattatcaatgtttcctccagcaactgtgggggaaaagatggaaccggaaaggttatatgatt |
91439 |
T |
|
| Q |
209 |
cagtcaatatcatgttgtcactccaggcatgtactgttcaatttgttgtcatatacttttaactactcgcaaaccattcaaatttctacttgatctttga |
308 |
Q |
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|||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
91438 |
cagtcaatctcctgttgtcacttcaggcatgtactgttcaatttgttgtcatatacttttaattactcgcagaccattcaaatttctacttgatctttga |
91339 |
T |
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| Q |
309 |
tcaacattaacgc |
321 |
Q |
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||||||||||||| |
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| T |
91338 |
tcaacattaacgc |
91326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 105232 - 105344
Alignment:
| Q |
125 |
tggtgtttcagtgttgtttactattatcaatgtttcctccagcaattgtgggggaaaagatggaaccggaaaggttatatgattcagtcaatatcatgtt |
224 |
Q |
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||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| || |||| |
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| T |
105232 |
tggtgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggtcaatgtcttgtt |
105331 |
T |
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| Q |
225 |
gtcactccaggca |
237 |
Q |
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||| || |||||| |
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| T |
105332 |
gtcgcttcaggca |
105344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 251
Target Start/End: Original strand, 165876 - 165999
Alignment:
| Q |
128 |
tgtttcagtgttgtttactattatcaatgtttcctccagcaattgtgggggaaaagatggaaccggaaaggttatatgattcagtcaatatcatgttgtc |
227 |
Q |
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|||| ||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| |
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| T |
165876 |
tgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtc |
165975 |
T |
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| Q |
228 |
actccaggcatgtactgttcaatt |
251 |
Q |
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|| |||||| ||||| ||||||| |
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| T |
165976 |
gcttcaggcaagtactattcaatt |
165999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 165770 - 165833
Alignment:
| Q |
14 |
agaaggtttgaaggtaactaacaacataggctatgaataacataatttgataataagctttcac |
77 |
Q |
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|||||| |||||||||| |||||||||||||||| || || |||||||||| ||||||||||| |
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| T |
165770 |
agaaggattgaaggtaattaacaacataggctataaacaatgtaatttgatactaagctttcac |
165833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 5721109 - 5720993
Alignment:
| Q |
127 |
gtgtttcagtgttgtttactattatcaatgtttcctccagcaattgtgggggaaaagatggaaccggaaaggttatatgattcagtcaatatcatgttgt |
226 |
Q |
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|||||| |||||||| | || ||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| | |
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| T |
5721109 |
gtgttttagtgttgtctgcttttatcaatgttgcctccagagattgtgggggaaaaaatggaacctgaaaggttatatgattcagtcaatatcttgtttt |
5721010 |
T |
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| Q |
227 |
cactccaggcatgtact |
243 |
Q |
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| T |
5721009 |
ctcttcaggcaagtact |
5720993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 5688377 - 5688261
Alignment:
| Q |
127 |
gtgtttcagtgttgtttactattatcaatgtttcctccagcaattgtgggggaaaagatggaaccggaaaggttatatgattcagtcaatatcatgttgt |
226 |
Q |
| |
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|||||| |||||||| | || ||||||||||| |||| | ||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| | |
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| T |
5688377 |
gtgttttagtgttgtctgcttttatcaatgttgtctccggagattgtaggggaaaaaatggaacctgaaaggttatatgattccgtcaatatcatgtttt |
5688278 |
T |
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| Q |
227 |
cactccaggcatgtact |
243 |
Q |
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| T |
5688277 |
ctcttcaggcaagtact |
5688261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 5654039 - 5653932
Alignment:
| Q |
128 |
tgtttcagtgttgtttactattatcaatgtttcctccagcaattgtgggggaaaagatggaaccggaaaggttatatgattcagtcaatatcatgttgtc |
227 |
Q |
| |
|
|||||||||||||| |||| || |||||||| |||||| ||||||||||||| | | ||||| |||||| ||||||||||||||||| | ||||||| |
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| T |
5654039 |
tgtttcagtgttgtctacttttgtcaatgttgcctccaaagattgtgggggaaatggttgaacccgaaaggctatatgattcagtcaattttgtgttgtc |
5653940 |
T |
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| Q |
228 |
actccagg |
235 |
Q |
| |
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||| |||| |
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| T |
5653939 |
acttcagg |
5653932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 5668542 - 5668498
Alignment:
| Q |
175 |
ggggaaaagatggaaccggaaaggttatatgattcagtcaatatc |
219 |
Q |
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||||||||||||||||| ||||||||||||||| | ||||||||| |
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| T |
5668542 |
ggggaaaagatggaacctgaaaggttatatgatgcggtcaatatc |
5668498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 13053746 - 13053856
Alignment:
| Q |
125 |
tggtgtttcagtgttgtttactattatcaatgtttcctccagcaattgtgggggaaaagatggaaccggaaaggttatatgattcagtcaatatcatgtt |
224 |
Q |
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||||||||||||||||| |||| ||||||||||| ||||| | |||||||| ||||| |||||||| || ||||||||||||||||||||| | |||| |
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| T |
13053746 |
tggtgtttcagtgttgtctacttttatcaatgttgcctcctgagattgtgggtgaaaatatggaaccagagaggttatatgattcagtcaatcttctgtt |
13053845 |
T |
|
| Q |
225 |
gtcactccagg |
235 |
Q |
| |
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|||||| |||| |
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|
| T |
13053846 |
gtcacttcagg |
13053856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 12136569 - 12136454
Alignment:
| Q |
127 |
gtgtttcagtgttgtttactattatcaatgtttcctccagcaattgtgggggaaaagatggaaccggaaaggttatatgattcagtcaatatcatgttgt |
226 |
Q |
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|||||||||||||| |||| |||||| |||| |||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||| | |||| |
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| T |
12136569 |
gtgtttcagtgttgcctacttttatcagtgttgcctccaaagattgtaggggaaaagatggaaccagaaaggttatatgattcagttaatatcctattgt |
12136470 |
T |
|
| Q |
227 |
cactccaggcatgtac |
242 |
Q |
| |
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| || |||||| |||| |
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| T |
12136469 |
ctcttcaggcaagtac |
12136454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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