View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15799_low_1 (Length: 576)
Name: NF15799_low_1
Description: NF15799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15799_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 522; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 16 - 561
Target Start/End: Original strand, 8258938 - 8259483
Alignment:
| Q |
16 |
gttttgatatatttgaaatgaaaggttatttggttttttatatcttcatgcacaaatcactattttccatatgcaaatccaccatcaaccctaagatcaa |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8258938 |
gttttgatatatttgaaatgaaatgttatttggttttttatatcttcatgcacaaatcactattttccatatgcaaatccaccatcaaccctaagatcaa |
8259037 |
T |
|
| Q |
116 |
ggtctgtgataaactcagcctgatcagaaactaaaaacaatacagcatcagccacatgtttgggtgtgagcaccactccctcaagccttgcatatttttg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8259038 |
ggtctgtgataaactcagcctgatcagaaactaaaaacaatacagcatctgccacatgtttgggtgtgagcaccactccctcaagccttgcatatttttg |
8259137 |
T |
|
| Q |
216 |
gtaagtcgcttgtgctttctcttcgctcatccccaacaacttacaagtcaatggtgttgctagtccatttggcgaaacacagttgactcttatcccgtgt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8259138 |
gtaagtcgcttgtgctttctcttcgctcatccccgacaacttacaagtcaatggtgttgctagtccatttggcgaaacacagttgactcttatcccgtgt |
8259237 |
T |
|
| Q |
316 |
gcggccagttgcacactggccgcacgcattagccccaacactgcatgctttgacattgtgtaatccgttgacctcgagcttcctacgctaccgctaacac |
415 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8259238 |
gtggccagttgcacactggccgcacgcattagccccaacactgcatgctttgacattgtgtaatccgttgacctcgagcttcctacgctaccgctaacac |
8259337 |
T |
|
| Q |
416 |
ttcccgtgcacacaatgctccccctcacgcgaccctccaccattgcacgcgccgcgtgtttcacacacaatgccatcccacgaacattgacgccaaataa |
515 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8259338 |
ttcctgtgcacacaatgctccccctcacgctaccctccaccattgcacgcgccgcgtgtttcacacacaatgccatcccacgaacattgacgccaaataa |
8259437 |
T |
|
| Q |
516 |
acggtcaagttgggacatatcaagttccattactgtttgatctgtg |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8259438 |
acggtcaagttgggacatatcaagttccattactgtttgatctgtg |
8259483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 557
Target Start/End: Original strand, 8256623 - 8257171
Alignment:
| Q |
16 |
gttttgatatatttgaaatgaaaggttat-------ttggttttttatatcttcatgcacaaatcactattttccatatgcaaatccaccatcaacccta |
108 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8256623 |
gttttgatatatttgaaatgaaatgttatttattatttggtttattatagcttagtgcacaaatcactattttccatatgcaaatccaccatcaacccta |
8256722 |
T |
|
| Q |
109 |
agatcaaggtctgtgataaactcagcctgatcagaaactaaaaacaatacagcatcagccacatgtttgggtgtgagcaccactccctcaagccttgcat |
208 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8256723 |
agatcaaggcctgtaataaactcagcctgatcagaaactaaaaacaatacagcatctgccacatgtttgggtgtgagcaccactccctcaagccttgcat |
8256822 |
T |
|
| Q |
209 |
atttttggtaagtcgcttgtgctttctcttcgctcatccccaacaacttacaagtcaatggtgttgctagtccatttggcgaaacacagttgactcttat |
308 |
Q |
| |
|
|||||||||||||| |||| | |||||| |||||||||||||| | |||||||||||| ||||| || |||||| | ||||||||||||||||||| ||| |
|
|
| T |
8256823 |
atttttggtaagtctcttgagttttctcctcgctcatccccaaaagcttacaagtcaaaggtgtcgccagtccactcggcgaaacacagttgactcgtat |
8256922 |
T |
|
| Q |
309 |
cccgtgtgcggccagttgcacactggccgcacgcattagccccaacactgcatgctttgacattgtgtaatccgttgacctcgagcttcctacgctaccg |
408 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | || |||| | || | |
|
|
| T |
8256923 |
tccatgtgcggccagttgcacactagccgcacgcattagtcccaacactgcatgctttgacattgtgtagtccgttgacctggggcctccttgacgacag |
8257022 |
T |
|
| Q |
409 |
ctaacacttcccgtgcacacaatgctccccctcacgcgaccctccaccattgcacgcgccgcgtgtttcacacacaatgccatcccacgaacattgacgc |
508 |
Q |
| |
|
|||||||| || ||||| || || |||||||| | ||||||||||||||||||||| || || |||||||||||||| ||||| || |||||||||| |
|
|
| T |
8257023 |
ctaacactccctgtgcatacgatactcccccttatgcgaccctccaccattgcacgtgctgcatgtttcacacacaacgccattccttgaacattgaccg |
8257122 |
T |
|
| Q |
509 |
caaataaacggtcaagttgggacatatcaagttccattactgtttgatc |
557 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| | ||||||||| |
|
|
| T |
8257123 |
caaataaacggtcaaattgggacatgtcaagttccatgattgtttgatc |
8257171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 88 - 561
Target Start/End: Original strand, 8308469 - 8308942
Alignment:
| Q |
88 |
gcaaatccaccatcaaccctaagatcaaggtctgtgataaactcagcctgatcagaaactaaaaacaatacagcatcagccacatgtttgggtgtgagca |
187 |
Q |
| |
|
|||||||||||||| || |||||||||| | || | |||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
8308469 |
gcaaatccaccatcgacaataagatcaagaccagttacaaactcagcctgattagaaactaaaaacaatacagcatctgccacatgtttaggtgtgagca |
8308568 |
T |
|
| Q |
188 |
ccactccctcaagccttgcatatttttggtaagtcgcttgtgctttctcttcgctcatccccaacaacttacaagtcaatggtgttgctagtccatttgg |
287 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| || ||||||||| ||| | |||||| |||||||||||||||||||| |||||||| | ||||| || |
|
|
| T |
8308569 |
ccactccctcaagccttgcataatttttataattctcttgtgcttcctcattgctcattcccaacaacttacaagtcaaaggtgttgccaacccattcgg |
8308668 |
T |
|
| Q |
288 |
cgaaacacagttgactcttatcccgtgtgcggccagttgcacactggccgcacgcattagccccaacactgcatgctttgacattgtgtaatccgttgac |
387 |
Q |
| |
|
||| ||| |||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
8308669 |
cgagacagagttcactcttatcccgtgtgcggctagttgtacgctggccgcacgcattagccccaatactgcatgctttgacatcgtgtaatccgttgac |
8308768 |
T |
|
| Q |
388 |
ctcgagcttcctacgctaccgctaacacttcccgtgcacacaatgctccccctcacgcgaccctccaccattgcacgcgccgcgtgtttcacacacaatg |
487 |
Q |
| |
|
||||||| ||| |||||||| |||||| || || ||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
8308769 |
ctcgagcctccccggctaccgccaacactccctgtacacactatgctcccccttacgtgaccctctaccattgcacgcgccgcgtgtttcacacacaacg |
8308868 |
T |
|
| Q |
488 |
ccatcccacgaacattgacgccaaataaacggtcaagttgggacatatcaagttccattactgtttgatctgtg |
561 |
Q |
| |
|
||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
8308869 |
acattccacggacattgacggcaaataaacggtcaagttgggacatatcaagttccattattgtttgagctgtg |
8308942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 73 - 533
Target Start/End: Original strand, 8289397 - 8289857
Alignment:
| Q |
73 |
cactattttccatatgcaaatccaccatcaaccctaagatcaaggtctgtgataaactcagcctgatcagaaactaaaaacaatacagcatcagccacat |
172 |
Q |
| |
|
|||||||||||||| ||||||||||| || || |||||||||||| | |||| ||||||||| | || ||| |||||||||||||| |||| ||||||| |
|
|
| T |
8289397 |
cactattttccataagcaaatccaccgtcgacactaagatcaaggccggtgacaaactcagcatcattcgaagctaaaaacaatacaacatctgccacat |
8289496 |
T |
|
| Q |
173 |
gtttgggtgtgagcaccactccctcaagccttgcatatttttggtaagtcgcttgtgctttctcttcgctcatccccaacaacttacaagtcaatggtgt |
272 |
Q |
| |
|
| || ||||||||||||||||| ||||| ||||||||| | |||||| ||||||| || || | |||| ||| || || ||||||||||| ||||| |
|
|
| T |
8289497 |
gcttaggtgtgagcaccactccttcaagtcttgcatatcccttataagtctcttgtgccttttccttactcacccctaataatttacaagtcaaaggtgt |
8289596 |
T |
|
| Q |
273 |
tgctagtccatttggcgaaacacagttgactcttatcccgtgtgcggccagttgcacactggccgcacgcattagccccaacactgcatgctttgacatt |
372 |
Q |
| |
|
||||||||||| || || |||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| || ||||| ||||||||||| |
|
|
| T |
8289597 |
cgctagtccattcggtgagacacagttcactcttattccgtgtgcagccagttgcacactggctgcacgcattagccctaatactgcgtgctttgacatc |
8289696 |
T |
|
| Q |
373 |
gtgtaatccgttgacctcgagcttcctacgctaccgctaacacttcccgtgcacacaatgctccccctcacgcgaccctccaccattgcacgcgccgcgt |
472 |
Q |
| |
|
|||||||||||||||||| | ||| |||| | |||||| |||||||||||||| |||||||| | ||| ||||||||||| ||| | || || | |
|
|
| T |
8289697 |
gtgtaatccgttgacctcaggaatccatgactactgtgaacactccccgtgcacacaatactccccctaatgcgcccctccaccatagcatgtgcggcat |
8289796 |
T |
|
| Q |
473 |
gtttcacacacaatgccatcccacgaacattgacgccaaataaacggtcaagttgggacat |
533 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
8289797 |
gtttcacacacaatgccattcctcgaacattgattgtgaataaacggtctagttgggacat |
8289857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 261 - 487
Target Start/End: Original strand, 8261771 - 8261997
Alignment:
| Q |
261 |
agtcaatggtgttgctagtccatttggcgaaacacagttgactcttatcccgtgtgcggccagttgcacactggccgcacgcattagccccaacactgca |
360 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| || ||||||||||||| | || ||||||||||| || | ||||| | ||| | | |||| |
|
|
| T |
8261771 |
agtcaatggtgttgctaatccatttggcgagacacaattcactcttatcccgtattttgcaagttgcacactcgctgagcgcatcaaccctattattgca |
8261870 |
T |
|
| Q |
361 |
tgctttgacattgtgtaatccgttgacctcgagcttcctacgctaccgctaacacttcccgtgcacacaatgctccccctcacgcgaccctccaccattg |
460 |
Q |
| |
|
||||| || ||||||||||| ||| ||||| || ||| |||||| || || | |||||||||||||| ||||||||||| ||||||||||| | |
|
|
| T |
8261871 |
tgcttcgatattgtgtaatcggttaacctcaagacaccttggctacccaatacgctcgctgtgcacacaatgctacccctcacgcgcccctccaccatcg |
8261970 |
T |
|
| Q |
461 |
cacgcgccgcgtgtttcacacacaatg |
487 |
Q |
| |
|
|||| ||||||| |||||||||||||| |
|
|
| T |
8261971 |
cacgtgccgcgtatttcacacacaatg |
8261997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 500
Target Start/End: Original strand, 8324923 - 8325002
Alignment:
| Q |
421 |
gtgcacacaatgctccccctcacgcgaccctccaccattgcacgcgccgcgtgtttcacacacaatgccatcccacgaac |
500 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||| ||||| ||||| |||||||| ||||||||||| || ||||| |
|
|
| T |
8324923 |
gtgcacacaatgctacccctcacgcacccgtccaccatcgcacgtgccgcatgtttcacgcacaatgccattcctcgaac |
8325002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University