View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15799_low_2 (Length: 349)
Name: NF15799_low_2
Description: NF15799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15799_low_2 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 15779302 - 15778967
Alignment:
| Q |
14 |
gaacctgtgtccacacaagccttattaaggaacctacacatgcatttgtaaatacaagaatcaacatttcctagtaaaaccacacatcagaagtatgaga |
113 |
Q |
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| T |
15779302 |
gaaccagtgtccacacaagccttattaaggaacctacacatgcatttgtaaatacaagaatcaacatttcctagtaaaaccacacatcagaagtatgaga |
15779203 |
T |
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| Q |
114 |
aagtaggctagaacttatacctgaatgttggagtggaatcaatcttgaacttccctttactggtatactcttccaaactaagctcatatagttcttttgg |
213 |
Q |
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| T |
15779202 |
aagtaggctagaacttgtacctgaatgttggagtggaatcaatcttgaacttccctttactggtatactcttccaaactaagctcatatagttcttttgg |
15779103 |
T |
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| Q |
214 |
gtcttcaggaacagtcacaccccatttccttattgctgccacaatgaccttaaccattctattaatgggactccctgaaagcaatttgtgtctatagaaa |
313 |
Q |
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| T |
15779102 |
gtcttcaggaacagttacaccccatttccttatagctgccacaatgaccttaaccattctattaatgggactccctgaaagcaatttgtgtctatagaaa |
15779003 |
T |
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| Q |
314 |
ggcgtgcctgccaagaatgtgatgattgatattgca |
349 |
Q |
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| T |
15779002 |
ggtgtgcctgccaagaatgtgatgattgatattgca |
15778967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 122 - 349
Target Start/End: Complemental strand, 15754845 - 15754618
Alignment:
| Q |
122 |
tagaacttatacctgaatgttggagtggaatcaatcttgaacttccctttactggtatactcttccaaactaagctcatatagttcttttgggtcttcag |
221 |
Q |
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| T |
15754845 |
tagaatttatacttgaatgtttgagtgagatcaatcctgaattttcctttctttgtatactcttccaaactaagctcatataattctttagggtcatcag |
15754746 |
T |
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| Q |
222 |
gaacagtcacaccccatttccttattgctgccacaatgaccttaaccattctattaatgggactccctgaaagcaatttgtgtctatagaaaggcgtgcc |
321 |
Q |
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| T |
15754745 |
gaacaactgcatcaaatttccttatagctgccacaatgaccttagccatgctaataaatggactccctttaatcaatttgtgtctataaaaaggtgtgcc |
15754646 |
T |
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| Q |
322 |
tgccaagaatgtgatgattgatattgca |
349 |
Q |
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| T |
15754645 |
tgccaagaatgtgatgattgatattgca |
15754618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 108 - 349
Target Start/End: Complemental strand, 15765543 - 15765302
Alignment:
| Q |
108 |
atgagaaagtaggctagaacttatacctgaatgttggagtggaatcaatcttgaacttccctttactggtatactcttccaaactaagctcatatagttc |
207 |
Q |
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| T |
15765543 |
atgagaaagtatgctagaatttatacctgaatgtttgagtgagatcaatcttgaatttgcctttctttgtatactctttcaaactaagctcatataattc |
15765444 |
T |
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| Q |
208 |
ttttgggtcttcaggaacagtcacaccccatttccttattgctgccacaatgaccttaaccattctattaatgggactccctgaaagcaatttgtgtcta |
307 |
Q |
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| T |
15765443 |
tttagggtcattaggaacaactatatcaaattttcttatagctgccacaaataccttagccatgctaatgaaaggactccctttaatcaatttgtgtcta |
15765344 |
T |
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| Q |
308 |
tagaaaggcgtgcctgccaagaatgtgatgattgatattgca |
349 |
Q |
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| T |
15765343 |
taaaatggtgttcctgccaagaatgtgatgattgatattgca |
15765302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 124 - 346
Target Start/End: Complemental strand, 15736861 - 15736639
Alignment:
| Q |
124 |
gaacttatacctgaatgttggagtggaatcaatcttgaacttccctttactggtatactcttccaaactaagctcatatagttcttttgggtcttcagga |
223 |
Q |
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| T |
15736861 |
gaacttatacctcaatgtgggagtggaatcaattctaacatttcctttctttgcatactcttccaaatctagctcataaagttctttagggtcactagga |
15736762 |
T |
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| Q |
224 |
acagtcacaccccatttccttattgctgccacaatgaccttaaccattctattaatgggactccctgaaagcaatttgtgtctatagaaaggcgtgcctg |
323 |
Q |
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| T |
15736761 |
atagacacattccatttctttattgcagccacaatgaccttagccattttagtgaagggactccctgcaggtaatttatgtctatagaattgtgtgcctg |
15736662 |
T |
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| Q |
324 |
ccaagaatgtgatgattgatatt |
346 |
Q |
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| T |
15736661 |
ccaaaaatgttatgatagatatt |
15736639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 349
Target Start/End: Complemental strand, 15729033 - 15728862
Alignment:
| Q |
178 |
atactcttccaaactaagctcatatagttcttttgggtcttcaggaacagtcacaccccatttccttattgctgccacaatgaccttaaccattctatta |
277 |
Q |
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| T |
15729033 |
atactcttccaaatcaagttcatatagttctttagggtcactaggaataggcacattccatttcttcatagcagccactattaccttagccattttagta |
15728934 |
T |
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| Q |
278 |
atgggactccctgaaagcaatttgtgtctatagaaaggcgtgcctgccaagaatgtgatgattgatattgca |
349 |
Q |
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| T |
15728933 |
aagggacttcctgtaggtaatttatgtctatagaatggtgtgcctgccaaaaatattatgatagatattgca |
15728862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 348
Target Start/End: Original strand, 33412841 - 33412906
Alignment:
| Q |
283 |
actccctgaaagcaatttgtgtctatagaaaggcgtgcctgccaagaatgtgatgattgatattgc |
348 |
Q |
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| T |
33412841 |
actccctgcaggcaatttgtgtctataaaagggtgttcctcccaagaatatcatgattgatattgc |
33412906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 15766187 - 15766112
Alignment:
| Q |
14 |
gaacctgtgtccacacaagccttattaaggaacctacacatgcatttgtaaatacaagaatcaacatttcctagtaa |
90 |
Q |
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| T |
15766187 |
gaaccagtgtccacacatgccttgttaaggaatctgcatatgca-ttctaaacacaagaatcaatatttcatagtaa |
15766112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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