View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1579_high_15 (Length: 451)
Name: NF1579_high_15
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_high_15 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 6 - 434
Target Start/End: Original strand, 10996718 - 10997145
Alignment:
| Q |
6 |
gatgtcgaagaatataggaaacaacgcaagtgacgaagcagttacggggatcacacatgatactcctgtgcgtgcgtttcctactcaccatcaggaaatt |
105 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
10996718 |
gatgtcgaataatacaggaaacaacgcaagtgacgaagcagttacggggatcacacatgatgctcctgtgcgtatgtttcctactcaccatcaggaaatt |
10996817 |
T |
|
| Q |
106 |
caggtttcgaaaattgtccaaagggacttggatttatgggcccgaattcgtgaatatgatcaatggacggcggacgaagattttacgcaaatcctatcca |
205 |
Q |
| |
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||||||||||||| | |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |
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| T |
10996818 |
caggtttcgaaaaatttccaaagggacttggatt-atgggtccgaattcgtgaatatgatcaatggatggcggacgaagattttacgcaagttctatcca |
10996916 |
T |
|
| Q |
206 |
agaaacagaagcaggcagtgaaaaagcaagtgttaggcaaagcctcgtataacacccgtgcaaagggtacgcatcctctttccaaataaattcctctata |
305 |
Q |
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|
|||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10996917 |
agaaacagcagcaggcagtgaaaaagaaagtgttaggaaaagcctcgtataacacccgtgcaaagggtacgcatcctccttccaaataaattcctctata |
10997016 |
T |
|
| Q |
306 |
ataattgctctaaagaaggcagaaggtctactttgatgtgtaaagaaattttagtttttagaatggataagaaccgaagcatgatcatctacaagtacct |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| ||||||||||||||||||| ||||| |
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| T |
10997017 |
ataattgctctaaagaaggcagaaggtctactttgatgtgtaaagaaattgtagtttttggaatggaaaagaacggaagcatgatcatctacaaatacct |
10997116 |
T |
|
| Q |
406 |
caggattggagaggaatatggtttagtca |
434 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
10997117 |
caggattggagaggaatatggtttagtca |
10997145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 8479650 - 8479817
Alignment:
| Q |
98 |
aggaaattcaggtttcgaaaattgtccaaagggacttggatttatgggcccgaattcgtgaatatgatcaatggacggcggacgaagattttacgcaaat |
197 |
Q |
| |
|
||||||| ||||||||||||| ||| |||| ||||||||||||| ||| || ||||| || ||||||||| | | ||| | ||||| || |||||| | |
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|
| T |
8479650 |
aggaaatccaggtttcgaaaaatgttcaaaatgacttggatttataggctcgcattcgggagtatgatcaacgtatggcagccgaaggattcacgcaagt |
8479749 |
T |
|
| Q |
198 |
cctatccaagaaacagaagcaggcagtgaaaaagcaagtgttaggcaaagcctcgtataacacccgtg |
265 |
Q |
| |
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| || || |||||| |||| || ||||||||||||| ||||| ||| | ||||| |||||||||| |
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|
| T |
8479750 |
tttgtctaaaaaacagcagcaaacattgaaaaagcaagttttagggaaaacttcgtacaacacccgtg |
8479817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 275
Target Start/End: Complemental strand, 1052018 - 1051853
Alignment:
| Q |
110 |
tttcgaaaattgtccaaagggacttggatttatgggcccgaattcgtgaatatgatcaatggacggcggacgaagattttacgcaaatcctatccaagaa |
209 |
Q |
| |
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||||||| | |||||| || ||||||||| ||||||| ||||||||||| ||||| || || |||||| |||| ||| |||||| | |||||||| || |
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|
| T |
1052018 |
tttcgaagaatgtccagagtgacttggatatatgggcacgaattcgtgagtatgaaaaacagatggcggaggaaggtttcacgcaagtactatccaaaaa |
1051919 |
T |
|
| Q |
210 |
acagaagcaggcagtgaaaaagcaagtgttaggcaaagcctcgtataacacccgtgcaaagggtac |
275 |
Q |
| |
|
||| | | | ||| ||||||||||||||| | || || | || |||||||| ||||||||||| |
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|
| T |
1051918 |
gcagcaaaaagaagtaaaaaagcaagtgttatgaaaggctccatacaacacccgggcaaagggtac |
1051853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 104 - 274
Target Start/End: Original strand, 1632911 - 1633081
Alignment:
| Q |
104 |
ttcaggtttcgaaaattgtccaaagggacttggatttatgggcccgaattcgtgaatatgatcaatggacggcggacgaagattttacgcaaatcctatc |
203 |
Q |
| |
|
||||||| || |||| |||||| || ||||||||||||||||| || ||| |||||||||| ||| |||||||||| ||| |||||||||| | | || |
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|
| T |
1632911 |
ttcaggtctcaaaaaatgtccagagagacttggatttatgggctcgtatttgtgaatatgaccaacggacggcggatgaaagttttacgcaagtattgtc |
1633010 |
T |
|
| Q |
204 |
caagaaacagaagcaggcagtgaaaaagcaagtgttaggcaaagcctcgtataacacccgtgcaaagggta |
274 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||||| || || ||||||||||||| ||||||||||| |
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|
| T |
1633011 |
caagaagcaacagcgggcagtgaaaaagcaagtgttaggaaacgcttcgtataacacccatgcaaagggta |
1633081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 165 - 275
Target Start/End: Complemental strand, 43022159 - 43022049
Alignment:
| Q |
165 |
tcaatggacggcggacgaagattttacgcaaatcctatccaagaaacagaagcaggcagtgaaaaagcaagtgttaggcaaagcctcgtataacacccgt |
264 |
Q |
| |
|
|||| |||| ||||| |||| |||||||||| | | |||||||| || ||||||||||||||| |||||||||||| || || ||||||||||||||| |
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|
| T |
43022159 |
tcaacggacagcggatgaaggttttacgcaagtattgtccaagaagcaacagcaggcagtgaaaaggcaagtgttaggaaacgcttcgtataacacccgt |
43022060 |
T |
|
| Q |
265 |
gcaaagggtac |
275 |
Q |
| |
|
||||||||||| |
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|
| T |
43022059 |
gcaaagggtac |
43022049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 273
Target Start/End: Complemental strand, 19936550 - 19936375
Alignment:
| Q |
98 |
aggaaattcaggtttcgaaaattgtccaaagggacttggatttatgggcccgaattcgtgaatatgatcaatggacggcggacgaagattttacgcaaat |
197 |
Q |
| |
|
||||||| ||||||||||||| ||| |||| ||||||||||||||||| || ||||| || ||||||||||| | ||| | ||||| || ||||| | |
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|
| T |
19936550 |
aggaaatccaggtttcgaaaaatgttcaaaatgacttggatttatgggctcgcattcgggagtatgatcaatgtatggccgccgaaggattcacgcaggt |
19936451 |
T |
|
| Q |
198 |
cctatccaagaaacagaagcaggcagtgaaaaagcaagtgttaggcaaagcctcgtataacacccgtgcaaagggt |
273 |
Q |
| |
|
| || || |||||| |||| || ||||||||||||| ||||| ||||| ||||| ||||||||||| |||||| |
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|
| T |
19936450 |
tttgtctaaaaaacagcagcaaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtgcgaagggt |
19936375 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 98 - 273
Target Start/End: Original strand, 41068016 - 41068191
Alignment:
| Q |
98 |
aggaaattcaggtttcgaaaattgtccaaagggacttggatttatgggcccgaattcgtgaatatgatcaatggacggcggacgaagattttacgcaaat |
197 |
Q |
| |
|
||||||| ||||||||||||| ||| |||| ||||||||||||||||| || ||||| || || |||||| | | ||| | ||||| || |||||| | |
|
|
| T |
41068016 |
aggaaatccaggtttcgaaaaatgttcaaaatgacttggatttatgggctcgcattcgggagtaagatcaacgtatggcagccgaaggattcacgcaagt |
41068115 |
T |
|
| Q |
198 |
cctatccaagaaacagaagcaggcagtgaaaaagcaagtgttaggcaaagcctcgtataacacccgtgcaaagggt |
273 |
Q |
| |
|
| || || |||||| |||| || ||||||||||||| ||||| ||||| ||||| ||||||||||| |||||| |
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|
| T |
41068116 |
tttgtctaaaaaacagcagcaaacattgaaaaagcaagttttagggaaagcttcgtacaacacccgtgcgaagggt |
41068191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 275
Target Start/End: Original strand, 26657199 - 26657341
Alignment:
| Q |
133 |
ttggatttatgggcccgaattcgtgaatatgatcaatggacggcggacgaagattttacgcaaatcctatccaagaaacagaagcaggcagtgaaaaagc |
232 |
Q |
| |
|
|||||||||| ||| || |||||||||||||||||| ||| |||||| |||| || || ||| | ||||||| || ||| | || ||||| |||| || |
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|
| T |
26657199 |
ttggatttataggcacgtattcgtgaatatgatcaacggatggcggatgaaggcttcacacaagttttatccaaaaagcagcaacaagcagttaaaaggc |
26657298 |
T |
|
| Q |
233 |
aagtgttaggcaaagcctcgtataacacccgtgcaaagggtac |
275 |
Q |
| |
|
|||||||||| || || |||| |||||||| ||||||||||| |
|
|
| T |
26657299 |
aagtgttaggaaaggctccgtacaacacccgggcaaagggtac |
26657341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 261 - 311
Alignment:
| Q |
224 |
tgaaaaagcaagtgttaggcaaagcctcgtataacacccgtgcaaagggta |
274 |
Q |
| |
|
||||||||||||| | || ||||| ||||||||||||||||||||||||| |
|
|
| T |
261 |
tgaaaaagcaagttatgggtaaagcttcgtataacacccgtgcaaagggta |
311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 27506515 - 27506618
Alignment:
| Q |
133 |
ttggatttatgggcccgaattcgtgaatatgatcaatggacggcggacga-agattttacgcaaatcctatccaagaaacagaagcaggcagtgaaaaag |
231 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||||| |||| |||||||| ||| ||||| ||| || || ||| |||||||||||| | |||||||| |
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|
| T |
27506515 |
ttggaattatgggcaagaattcgagaatatgatcaaaggacagcggacgagaga-tttacacaagtcataaccaggaaacagaagcaaacggtgaaaaaa |
27506613 |
T |
|
| Q |
232 |
caagt |
236 |
Q |
| |
|
||||| |
|
|
| T |
27506614 |
caagt |
27506618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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