View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_high_17 (Length: 440)
Name: NF1579_high_17
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Original strand, 47837707 - 47838114
Alignment:
| Q |
15 |
tatataggagtttgaaatttttaaatgttataaattcattgaaaagttaaaacaatannnnnnncccaggaaatttatggttcaactggtatctggttac |
114 |
Q |
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| T |
47837707 |
tatataggagtttgaaatttttaaatgttataaattcattgaaaagttaaaacaatatttttttcccaggaaatttatggttcaactggtatctggttac |
47837806 |
T |
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| Q |
115 |
ttgccaagtgcgattttggttttatttttaattggtgttggaccagtgatgatgttactttcagcagttgaagggccaatttcccgtagcggcaagaaga |
214 |
Q |
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| T |
47837807 |
ttgccaagtgcgattttggttttatttttaattggtgttggaccagtgatgatgttactttcagcagttgaagggccaatttcccgtagcggcaagaaga |
47837906 |
T |
|
| Q |
215 |
aaagtgcatgctgcaaagttgtgtatttcaccatttggaatgtgttttttgtcaatgtttttaccgggtctattatcagtcaactatcagtgtttactag |
314 |
Q |
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| T |
47837907 |
aaagtgcatgctgcaaagttgtgtatttcaccatttggaatgtgttttttgtcaatgtttttaccgggtctattatcagtcaactatcagtgtttactag |
47838006 |
T |
|
| Q |
315 |
tataacagaactacctgcccaattggcaaaggcagtcccagctcaggtgaagtattcatgttccaagatgataaatgacaaattcctattgtaaattata |
414 |
Q |
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| T |
47838007 |
tataacagaactacctgcccaattggcaaaggcagtcccagctcaggtgaagtattcatgttccaagatgataaatgacaaattcctattgtaaattata |
47838106 |
T |
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| Q |
415 |
cacccttt |
422 |
Q |
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| T |
47838107 |
cacccttt |
47838114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 107 - 363
Target Start/End: Complemental strand, 4705827 - 4705571
Alignment:
| Q |
107 |
ctggttacttgccaagtgcgattttggttttatttttaattggtgttggaccagtgatgatgttactttcagcagttgaagggccaatttcccgtagcgg |
206 |
Q |
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|||||||| | ||||||| ||| |||||||||||||| | |||| |||| |||||||| || ||||| ||||||| || || |||||||| || || |
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| T |
4705827 |
ctggttacctaccaagtgtgatattggttttatttttgtgttttgttccaccattgatgatgctattttcaacagttgagggtcctatttcccgcagtgg |
4705728 |
T |
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| Q |
207 |
caagaagaaaagtgcatgctgcaaagttgtgtatttcaccatttggaatgtgttttttgtcaatgtttttaccgggtctattatcagtcaactatcagtg |
306 |
Q |
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| T |
4705727 |
aaggaagaaaagtgcatgttggaaagttttgtacttcacaatctggaatgtgttttttattaatgttttaactggttctcttataagtcaactttcagtc |
4705628 |
T |
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| Q |
307 |
tttactagtataacagaactacctgcccaattggcaaaggcagtcccagctcaggtg |
363 |
Q |
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||| |||| ||| ||| || ||||| | | ||||||||||| |||||||||||| |
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| T |
4705627 |
ttttctagcttaaaagagctgcctgcaacacttgcaaaggcagtgccagctcaggtg |
4705571 |
T |
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