View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1579_high_25 (Length: 382)
Name: NF1579_high_25
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 25794647 - 25794943
Alignment:
| Q |
17 |
ttcaatgattattcatgtgtgagacaatcatttatatacctaatgtatgttggatcgatttgacatttgttacaatactagctacacagtagcactagga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
25794647 |
ttcaatgattattcatgtgtgagacaatcatttatatac--aatgtatgttggatcgatttgacatttgttacagtactagctacactgtagcactagga |
25794744 |
T |
|
| Q |
117 |
cacaactctctgtaaaccgcaaagaaaaatcaggataaacttcaaagtgaaattcaaggaaatcccttccaaactcgagtaaaaatcataaagagacttg |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25794745 |
aacaactctctgtaaacggcaaagaaaaatcagaataaacttcaaagtgaaattcaaggaaatcccttccaaactcgagtaaaaatcataaagagacttg |
25794844 |
T |
|
| Q |
217 |
ttgtccacgattttcttccggatcgagctttggttggcagattggaaaggaggatccatgaccctagggggcgacctttgcagttttaaagccctcata |
315 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25794845 |
gtgtccatgattttcttcccgatcgagctttggttggcagattggaaaggaggatccatgaccctagggggcgacctttgcagttttaaagccctcata |
25794943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University