View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_high_29 (Length: 375)
Name: NF1579_high_29
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 10943351 - 10943708
Alignment:
| Q |
1 |
tcaattcaacaatgtggacttcaccctttattctaaatgagttgttgatcatgttatatctagcaatttatttgatgttgttgaatgcattttttgatgc |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10943351 |
tcaattcaacaatgtggacttcgccctttattctaaatgagttgttgatcatgttatatctagcaatttatttgatgttgttgaatgcattttttgatgc |
10943450 |
T |
|
| Q |
101 |
tgtttcttgcagnnnnnnnnaatgcctctaatctagtatgtgttttctgcgattgcgtcttggttgcatgggtgaatgccaatggtgtccacaatttttg |
200 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10943451 |
tgtttcttgcagttttttttaatgccactaatctagtatgtgttttctgcgattgcgtattggttgcatgggtgaatgccaatggtgtccacaatttttg |
10943550 |
T |
|
| Q |
201 |
aacaagagatataacattctttagtcggaactagtggttatttgtaccttgcctaagttagggtccttttcaaagttgctatagttttgtgacctttttt |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10943551 |
aacaagtgatataacattctttagtcggaactagtggttatttgtaccttgcctgagttagggtccttttcaaagttgctatagttttgtgacctttttt |
10943650 |
T |
|
| Q |
301 |
cggtacaatttttgtgacatattaagcatttatttaatacaaaactatagtaatggaa |
358 |
Q |
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| T |
10943651 |
cggtacaatttttgtgacatattaagcatttatttgatacaaaactatagtaatggaa |
10943708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 10949220 - 10949577
Alignment:
| Q |
1 |
tcaattcaacaatgtggacttcaccctttattctaaatgagttgttgatcatgttatatctagcaatttatttgatgttgttgaatgcattttttgatgc |
100 |
Q |
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| T |
10949220 |
tcaattcaacaatgtggacttcgccctttattctaaatgagttgttgatcatgttatatctagcaatttatttgatgttgttgaatgcattttttgatgc |
10949319 |
T |
|
| Q |
101 |
tgtttcttgcagnnnnnnnnaatgcctctaatctagtatgtgttttctgcgattgcgtcttggttgcatgggtgaatgccaatggtgtccacaatttttg |
200 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10949320 |
tgtttcttgcagttttttttaatgccactaatctagtatgtgttttctgcgattgcgtattggttgcatgggtgaatgccaatggtgtccacaatttttg |
10949419 |
T |
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| Q |
201 |
aacaagagatataacattctttagtcggaactagtggttatttgtaccttgcctaagttagggtccttttcaaagttgctatagttttgtgacctttttt |
300 |
Q |
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| T |
10949420 |
aacaagtgatataacattctttagtcggaactagtggttatttgtaccttgcctgagttagggtccttttcaaagttgctatagttttgtgacctttttt |
10949519 |
T |
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| Q |
301 |
cggtacaatttttgtgacatattaagcatttatttaatacaaaactatagtaatggaa |
358 |
Q |
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| T |
10949520 |
cggtacaatttttgtgacatattaagcatttatttgatacaaaactatagtaatggaa |
10949577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 54 - 272
Target Start/End: Original strand, 10919535 - 10919750
Alignment:
| Q |
54 |
ttatatctagcaatttatttgatgttgttgaatgcattttttgatgctgtttcttgcagnnnnnnnnaatgcctctaatctagtatgtgttttctgcgat |
153 |
Q |
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|||||||| | ||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| |||||| |
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| T |
10919535 |
ttatatctggtaatttatttgatgttattgaatgcatttttt-atgctgtttcttgcagttttttt--atgcctctaatctagtatgtcttttgtgcgat |
10919631 |
T |
|
| Q |
154 |
tgcgtcttggttgcatgggtgaa-tgccaatggtgtccacaatttttgaacaagagatataacattctttagtcggaactagtggttatttgtaccttgc |
252 |
Q |
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||||| |||||||||| |||||| ||||||||||||||||||||||||||| || ||||||||||||| |||||| ||| ||||||||||| |||||||| |
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| T |
10919632 |
tgcgttttggttgcat-ggtgaattgccaatggtgtccacaatttttgaactagtgatataacattctgtagtcgaaaccagtggttatttataccttgc |
10919730 |
T |
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| Q |
253 |
ctaagttagggtccttttca |
272 |
Q |
| |
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|| |||||| |||||||||| |
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| T |
10919731 |
ctgagttagagtccttttca |
10919750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 49407307 - 49407252
Alignment:
| Q |
1 |
tcaattcaacaatgtggacttcaccctttattctaaatgagttgttgatcatgtta |
56 |
Q |
| |
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|||||||||||||||||||||| | || |||||||| |||||||| ||||||||| |
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| T |
49407307 |
tcaattcaacaatgtggacttcgcactggattctaaaagagttgttaatcatgtta |
49407252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 355
Target Start/End: Original strand, 46864429 - 46864457
Alignment:
| Q |
327 |
catttatttaatacaaaactatagtaatg |
355 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
46864429 |
catttatttaatacaaaactatagtaatg |
46864457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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