View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1579_high_4 (Length: 662)

Name: NF1579_high_4
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1579_high_4
NF1579_high_4
[»] chr3 (1 HSPs)
chr3 (15-645)||(47271469-47272108)


Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 15 - 645
Target Start/End: Original strand, 47271469 - 47272108
Alignment:
Q  15 caaaggtgacgtgagtgaaggctaagatgaaagatatcgatcgatggcggtttatacaatgcagataaagaatcgaacaacatgtttaagaattaagatc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47271469 caaaggtgacgtgagtgaaggctaagatgaaagatatcgatcgatggcggtttatacaatgcagataaagaatcaaacaacatgtttaagaattaagatc 47271568  T
Q  115 attataaattctgcttttagtaatcttgtggagaaagttttttcttttaaacacaaattcttgcatgaattggtcgtaagcatgttcaacttttgagaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47271569 attataaattctgcttttagtaatcttgtggagaaagttttttcttttaaacacaaattcttgcatgaattggtcgtaagcatgttcaacttttgagaaa 47271668  T
Q  215 gctatgatttgtaattgtcatttagtatgaacatgcacacggatcatcaagatgagaaccgtgtgaatttgtcccaaaaacaagggaatccgtgtctgat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47271669 gctatgatttgtaattgtcatttagtatgaacatgcacacggatcatcaagatgagaaccgtgtgaatttgtcccaaaaacaagggaatccgtgtctgat 47271768  T
Q  315 gttaagagataacatatcaaacgttgtttgttgttctagtattttcagcttgattttcatgtccaagggccagaaccttattta-tacttggagttatta 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47271769 gttaagagataacatatcaaacgttgtttgttgttctagtattttcagcttgattttcatgtccaagggccagaaccttatttattacttggagttatta 47271868  T
Q  414 aaattgattcaagtggtttgatatctcctaatagctatttttcttttatatcatct---agcattaacaatagactacacctaaagaaatgcag-----t 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||     |    
T  47271869 aaattgattcaagtggtttgatatctcctaatagctatttttcttttatatcatctagcagcattaacaatagactacacctaaagaaatgcagttatat 47271968  T
Q  506 tatatgtaatctcttacaccgcttcatatagtgctcaccacattataactaatttccacacaaaaattatactaattaatagtaannnnnnnggcttatg 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||       ||||||||    
T  47271969 tatatgtaatctcttacaccgcttcatatagtgctcaccacattataactaatttccacaaaaacattatactaattaatagtaatttttttggcttatg 47272068  T
Q  606 tactaagtagtaatcacttctagtaaagtattcgattagt 645  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47272069 tactaagtagtaatcacttctagtaaagtattcgattagt 47272108  T

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