View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_high_55 (Length: 247)
Name: NF1579_high_55
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_high_55 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 48655346 - 48655580
Alignment:
| Q |
17 |
attaaaaaataaattattttaggaaataaaagttgaacaattataacttttttaagtactaaatannnnnnncgaaattatagttgaacaactacaaaaa |
116 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
48655346 |
attaaaaaataaattattttaggaaataaa-gttgaacaattataacttttttaagtactaaacatttttttcgaaattatagttgaacaactacaaaaa |
48655444 |
T |
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| Q |
117 |
cattataatcataagcactcatctactatttccactttcaaatcaccctaacagagtc-----tctcagacgtagacatttatccaacaaactatcaaat |
211 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
48655445 |
cattataaccataagcactcatctactatttccactttcaaatcaccctaacagagtcgatagactcagacgtagacatttatccaacaaattatcaaat |
48655544 |
T |
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| Q |
212 |
cattgaagattcactccaaaaacatatcaaattatt |
247 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
48655545 |
cattgaagattcactccaaaaacatatcaaattatt |
48655580 |
T |
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