View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_high_57 (Length: 247)
Name: NF1579_high_57
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_high_57 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 5032665 - 5032898
Alignment:
| Q |
13 |
aatatagtaattgaaaattgacaagttgttataagtgcttgaaaattgtcaactagagcacattaagtgaaacaattatgtgtgataggtaaagaatcac |
112 |
Q |
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| T |
5032665 |
aatatagtaattgaaaattgacaagttgttataagtgcttgaaaattgtcaactag--cacattaagtgaaacaattatgtgtgataggtaaagaatcac |
5032762 |
T |
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| Q |
113 |
tctagcagtaatataaagagagaaccatactaacatgtgcgt-aaaagaaatataaatatttgtcgtccttcatattcatatattttttccttccactag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5032763 |
tctagcagtaatataaagagagaaccatactaacatgtgcgtaaaaagaaatataaatatttgtcgtccttcatattcatatattttttccttccactag |
5032862 |
T |
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| Q |
212 |
caaaatggtatcacaagattcacaactaattaagta |
247 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
5032863 |
caaaatggtatcacaagattcacaactatttaagta |
5032898 |
T |
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