View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_high_66 (Length: 231)
Name: NF1579_high_66
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_high_66 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 13429375 - 13429179
Alignment:
| Q |
20 |
atgtgtaccctaacaacccttcttaatgcaatattttaatcaccattgcatgatgatgtaggtcaatatgatac----atgtggcaatacatcgtttcaa |
115 |
Q |
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| T |
13429375 |
atgtgtaccctaacaacccttcttaatgcaatattttaatcaccattgcatgatgatgtaggtcaatatgatactcttatgtggcaacacatcgtttcaa |
13429276 |
T |
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| Q |
116 |
gttcggcgtggtgggtacttatcctatttggaatattatcattcgttaatgaacaatcttcaactagccaaccgtaatgaggctctgcggcgatatt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13429275 |
gttcggcgtggtgggtacttatcctatttggaatattatcattcgttaatgaacaatctccaactagccaaccgtaatgaggctctgcggcgatatt |
13429179 |
T |
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