View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_1 (Length: 686)
Name: NF1579_low_1
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 563; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 11 - 671
Target Start/End: Complemental strand, 41701383 - 41700726
Alignment:
| Q |
11 |
caaaggatatgcttaatgacttgcacacacttggttaattcaaatcattagtggttattgaattattttgataccatgttattgacaatcggccaaaaat |
110 |
Q |
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| T |
41701383 |
caaaggatatgcttaatgacttgcacacacttggttaattcaaatcattagtggttattgaattattttgataccatgttattgacaatcggccaaaaat |
41701284 |
T |
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| Q |
111 |
gattttgctaatgacttgtaaaatacttgattatttcaattcatattatggttaacgagttactttgacactatatactatatgatttaattttatggtg |
210 |
Q |
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| T |
41701283 |
gattttgctaatgacttgcaaa-tacttgattatttcaattcatattatggttaacgagttactttgacactatatactatatgatttaattttatggtg |
41701185 |
T |
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| Q |
211 |
gaaaacttgattacgtgtggaaattaaaacattttaaagnnnnnnntatcttactttagaaga---gtgggataagtcaaaagctatgtgatttaactcc |
307 |
Q |
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| T |
41701184 |
gaaaacttgattacgtgtggaaattaaaactttttaaagaaaaaaatatcttactttagaagaagagtgggataagtcaaaagctatgtgatttaactcc |
41701085 |
T |
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| Q |
308 |
tataatgcgttgcataattctttcaagttccactgcttcttcacaatgggagaggcagttaattatggcttcacaaaaa-gcttattgtgttggtaatag |
406 |
Q |
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| T |
41701084 |
tataatgcgttgcataattctttcaagttccactgcttcttcacaatgggagaggcagttaattatggcttcacaaaaaagcttattgtgttggtaatag |
41700985 |
T |
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| Q |
407 |
cagcactgattacgcataatgcaaatgttgcccatcttggagtacaaaacgccttctaagctgagctcttgagtgctattttgactattaattaaaatta |
506 |
Q |
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| T |
41700984 |
cagcactgattacgcataatgcaaatgttgcccatcttggagtacaaaacgccttctaagctgagctcttgagtgctattttgattattaattaaaatta |
41700885 |
T |
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| Q |
507 |
caaatagtagtatattttttcataggccccatatattgcttagaatttagtgaaaacatctattcgaaaatagctttttcccataggttccataagcaaa |
606 |
Q |
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| T |
41700884 |
caaa------tatgttttttcataggccccatatattgcttagaatttagtgaaaacatctattcgaagatagctttttcccataggttccataagcaaa |
41700791 |
T |
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| Q |
607 |
aataacccaatcgaaagatacattttgataggttggataacttagaagccactgaagcaatttct |
671 |
Q |
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| T |
41700790 |
aataacccaatcgaaagatacattttgataggttgaataacttagaagtcactgaagcaatttct |
41700726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 41814822 - 41814881
Alignment:
| Q |
266 |
ttagaagagtgggataagtcaaaagctatgtgatttaactcctataatgcgttgcataatt |
326 |
Q |
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| T |
41814822 |
ttagaagagcgggataagtcaaaagccatgtca-ttagctcctataatgtgtttcataatt |
41814881 |
T |
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