View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_11 (Length: 511)
Name: NF1579_low_11
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 298 - 495
Target Start/End: Original strand, 39600285 - 39600482
Alignment:
| Q |
298 |
cagatattttaacactgttatattttcaatatcgatttcgtagtcaaaatatttgattaaactcaaaaggatctcttattatctcattaaaaaactatgc |
397 |
Q |
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| T |
39600285 |
cagatattttaacactgttatattttcaatatcgatttcgtagtcaaaatatttgattaaactcaaaaggatctcttactatctcattaaaaaactatgc |
39600384 |
T |
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| Q |
398 |
aacaaataatagtaggaaaacaaaatttgtctaaggaaacgtgcgtgtaatgctctcaccgcttcttgccccacgtcacgtggagtcccagcagattc |
495 |
Q |
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| T |
39600385 |
aacaactaatagtaggaaaacaaaatttgtctaagaaaacgtgcgtgtaatgctctcaccgcttcttgccccacgtcacgtggagtcccagcagattc |
39600482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 39600070 - 39600192
Alignment:
| Q |
95 |
tattaaaaataaatccagtcctactcnnnnnnnnnggtcaggcagtcgtgtcttactcaatttgattaagaaataattttgtttgttacactaatttatt |
194 |
Q |
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| T |
39600070 |
tattaaaaataaatccagtcctactctttttttt-ggtcaggcaatcgtgtcttactctatttgattaagaaataattttgtttgttacactaatttatt |
39600168 |
T |
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| Q |
195 |
tagtttaattattgtttaatatat |
218 |
Q |
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| T |
39600169 |
tagtttaattattgtttaatatat |
39600192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 39599265 - 39599345
Alignment:
| Q |
23 |
gtcccgtgtgaagaccaaaaaccaaacatattaattgctaacataatgggtttatcccactagtactattattattaaaaa |
103 |
Q |
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| T |
39599265 |
gtcccgtgtgaagaccaaaaaccaaacatattaattgctaacataatgggtttatcccactagtactattattattaaaaa |
39599345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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