View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_13 (Length: 486)
Name: NF1579_low_13
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 4 - 468
Target Start/End: Original strand, 951826 - 952298
Alignment:
| Q |
4 |
aaatatgaaaccacgataacttttattttttgagggaatgaaaccacgacaacttgagattggatcagtatttagatttgtataatggctaaatgccctg |
103 |
Q |
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| T |
951826 |
aaatatgaaaccacgataactttt-ttttttgagggaatgaaaccacgacaacttgagattggatcagtatttagatttgtataatggctaaatgccctg |
951924 |
T |
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| Q |
104 |
ttggcaaatccaaagagagacaaacttagaaggaaaaaattatataaaaagtatatcttggtggcttttaataactttaaggtnnnnnnnnnnnctcatt |
203 |
Q |
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| T |
951925 |
ttggcaaatccaaagagagacaaacttagaaggaaaaaattatataaaaagtagattttggtggcttttaataactttaaggt--aaaaaaaaactcatt |
952022 |
T |
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| Q |
204 |
tcttttgtgatgtgagtgatccatgtgtat-agatagtctctttcaattttcttatagcttctacgttttaattgctaataccgcgtcccacgattaatt |
302 |
Q |
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| T |
952023 |
tcttttgtgatgtgagtgatccatgtgtatcaggtagtctctttcaattttcttatagcttgtacgttttaattgctaataccgcgtcccacaattaatt |
952122 |
T |
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| Q |
303 |
ttgatgcaatttcaaaaaactttatat----gtttcattgaaacgta------cgttcactttaacgtgtgaacaaacacacacttaatctaattgattt |
392 |
Q |
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| T |
952123 |
ttgatgcaatttcaaaaaactttatatcctagtttcattgaaacttatgtctgcgttcactttaacgtgtgaacaaacacacacttaatctcgttcatta |
952222 |
T |
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| Q |
393 |
actttattctttaactatcaactatatctaatgtcccttttggaaaatatcataatcttcattgaaaagctctata |
468 |
Q |
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| T |
952223 |
actttattccttaactatcaactatatctaatgtcccttttggaaaatatcataatctccattgaaaagctctata |
952298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 389 - 468
Target Start/End: Complemental strand, 1099718 - 1099640
Alignment:
| Q |
389 |
atttactttattctttaactatcaactatatctaatgtcccttttggaaaatatcataatcttcattgaaaagctctata |
468 |
Q |
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| T |
1099718 |
atttactttatt-tttaactatcaactatatctaatgtcccttttggaaaatatcataatctccattgaaaagctctata |
1099640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 1099897 - 1099821
Alignment:
| Q |
111 |
atccaaagagagacaaacttagaaggaaaaaattatataaaaagtatatcttggtggctttt-aataactttaaggt |
186 |
Q |
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| T |
1099897 |
atccaaagagggacaaatttaaaagaaaaaaattatataaaaagtagatttttgtggcttttaaaaaactttaaggt |
1099821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 10677885 - 10677768
Alignment:
| Q |
265 |
tacgttttaattgctaataccgcgtcccacgattaattttgatgcaatttcaaaaaactttat--atgtttcattgaaacgtac------gttcacttta |
356 |
Q |
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| T |
10677885 |
tacgttttaattgctaataccgtgtcccaatgtcaattttgatgcaattttaagaaactttatccttgcttcattgaaatgcacatctgtgttcacttta |
10677786 |
T |
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| Q |
357 |
acgtgtgaacaaacacac |
374 |
Q |
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| T |
10677785 |
acgtgtgaacagacacac |
10677768 |
T |
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