View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1579_low_14 (Length: 476)

Name: NF1579_low_14
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1579_low_14
NF1579_low_14
[»] chr4 (1 HSPs)
chr4 (18-476)||(53238695-53239154)
[»] chr1 (2 HSPs)
chr1 (430-476)||(2170117-2170163)
chr1 (431-475)||(28851102-28851146)
[»] chr7 (3 HSPs)
chr7 (431-476)||(32249062-32249107)
chr7 (429-476)||(47815629-47815676)
chr7 (430-476)||(33426438-33426484)
[»] chr8 (3 HSPs)
chr8 (432-476)||(11668480-11668524)
chr8 (436-476)||(11659315-11659355)
chr8 (431-474)||(31372280-31372323)
[»] chr6 (1 HSPs)
chr6 (431-472)||(10460822-10460863)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 53238695 - 53239154
Alignment:
Q  18 atcaaagtcatagatagatatagtgtataatagcggggaagcaatacgtaagaatagggaacacgatgacccataaccaagagactatcttgacccatta 117  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||    
T  53238695 atcaaaatcatagatatatatagtgtataatagcggggaagcaatacgtaagaagagggaacacgatgacccataaccaagggactatcttgatccatta 53238794  T
Q  118 ttacagtccccaaagaaaaacgagtatggtccatatgtattcatttattagtgtacaattctatacaccctgcatatttccattataaaccgaaatcaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  53238795 ttacagtccccaaagaaaaacgagtatggtccatatgtattcatttattagtctacaattctatacaccctgcatatttccattataaaccgaaatcaaa 53238894  T
Q  218 gctcagttaatgaacaagtgaagttatagtagggtagtttagcac-aaattgaaatagttgatgttnnnnnnntgatgtgtttgcaaatgaaattcaaaa 316  Q
    ||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||       |||| ||||||||||||||||||||||    
T  53238895 gctcagttaatgaacaagtgaagttatagtaggatagtttagtacaaaattgaaatagttgatgttaaaaaaatgatttgtttgcaaatgaaattcaaaa 53238994  T
Q  317 agcgagtctgccgaacatttttcatcaaaatgaaaatcacnnnnnnnnnnnnnnnnnnnnaaaatatagatcctacactctaaatactcattaatcttaa 416  Q
    || |||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||    
T  53238995 agtgagtctgccgaacatttttcatcaaaatgaaaatcactttttatgattttattttttaaaatatagatcctacactctaaatactcattaatcttaa 53239094  T
Q  417 tcacataatcataaggctccttctaccgtacacccatatatttgtatgtaccaatactcc 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53239095 tcacataatcataaggctccttctaccgtacacccatatatttgtatgtaccaatactcc 53239154  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 430 - 476
Target Start/End: Original strand, 2170117 - 2170163
Alignment:
Q  430 aggctccttctaccgtacacccatatatttgtatgtaccaatactcc 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2170117 aggctccttctaccgtacacccatatatttgtatgtaccaatactcc 2170163  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 28851102 - 28851146
Alignment:
Q  431 ggctccttctaccgtacacccatatatttgtatgtaccaatactc 475  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  28851102 ggctccttcttccgtacacccatatatttgtatgtaccaatactc 28851146  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 431 - 476
Target Start/End: Complemental strand, 32249107 - 32249062
Alignment:
Q  431 ggctccttctaccgtacacccatatatttgtatgtaccaatactcc 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32249107 ggctccttctaccgtacacccatatatttgtatgtaccaatactcc 32249062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 429 - 476
Target Start/End: Complemental strand, 47815676 - 47815629
Alignment:
Q  429 aaggctccttctaccgtacacccatatatttgtatgtaccaatactcc 476  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  47815676 aaggctccttctaccgtacacccatatatttgtatgtaacaatactcc 47815629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 430 - 476
Target Start/End: Original strand, 33426438 - 33426484
Alignment:
Q  430 aggctccttctaccgtacacccatatatttgtatgtaccaatactcc 476  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  33426438 aggctccttctactgtacacccatatatttgtatgtatcaatactcc 33426484  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 476
Target Start/End: Original strand, 11668480 - 11668524
Alignment:
Q  432 gctccttctaccgtacacccatatatttgtatgtaccaatactcc 476  Q
    |||||||||||  ||||||||||||||||||||||||||||||||    
T  11668480 gctccttctactatacacccatatatttgtatgtaccaatactcc 11668524  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 476
Target Start/End: Original strand, 11659315 - 11659355
Alignment:
Q  436 cttctaccgtacacccatatatttgtatgtaccaatactcc 476  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  11659315 cttctactgtacactcatatatttgtatgtaccaatactcc 11659355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 474
Target Start/End: Complemental strand, 31372323 - 31372280
Alignment:
Q  431 ggctccttctaccgtacacccatatatttgtatgtaccaatact 474  Q
    ||||| || |||||||||| ||||||||||||||||||||||||    
T  31372323 ggctctttttaccgtacactcatatatttgtatgtaccaatact 31372280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 472
Target Start/End: Original strand, 10460822 - 10460863
Alignment:
Q  431 ggctccttctaccgtacacccatatatttgtatgtaccaata 472  Q
    |||| |||||||| |||||||||||||||||||||| |||||    
T  10460822 ggcttcttctaccatacacccatatatttgtatgtatcaata 10460863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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