View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_15 (Length: 466)
Name: NF1579_low_15
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 31223568 - 31223140
Alignment:
| Q |
18 |
aatatatgaatacacgtgtacatttacatgtactaaaataaacataggatgttttaacaagtcatcaaacattttatctcttatattgataaaacacact |
117 |
Q |
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| T |
31223568 |
aatatatgaatacacgtgtacatttacatgtactaaaataaacataggatgttttaacaagtcatcaaacattttatcccttatattgataaaacacact |
31223469 |
T |
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| Q |
118 |
ctttccccttaaaaagtaatacattatcttttagttgttagnnnnnnnnnnn---attgcaatgtcatatgaacnnnnnnngaacaagtgatttcaaatt |
214 |
Q |
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| T |
31223468 |
ctttccccttaaaaagtaatacattatcttttagttgttagtttttttttattttattgcaatgtcatatgaacaaaaaaagaacaagtgatttcaaatt |
31223369 |
T |
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| Q |
215 |
ctcataaaatgcaaaccaagggtgtattaatttttacctgaaagacaccaaactccttgcaagcaattcgaatttcgttgatcgtttgagatctaagaga |
314 |
Q |
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| T |
31223368 |
ctcatgaaatgcaaaccaagggtgtattaatttttacctgaaagacaccaaactccttgcaagcaattcgaatttcgttgatcgtttgagatctaagaga |
31223269 |
T |
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| Q |
315 |
ttgttcccttaaattagacaagtctataatgggaagagtggtggagatggaaacatgatcataagtactagggcgttgcgatggaggaagaatataacat |
414 |
Q |
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| T |
31223268 |
ttgttcccttaaattagacaagtctataatgggaagagtggtggagatggaaacatgatcataagtaccagggcgttgcgatggaggaagaatataacat |
31223169 |
T |
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| Q |
415 |
tgaggtatagaagagactccttgatcact |
443 |
Q |
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| T |
31223168 |
tgaggtatagaagagactccttgatcact |
31223140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 437
Target Start/End: Complemental strand, 31219274 - 31219225
Alignment:
| Q |
388 |
cgttgcgatggaggaagaatataacattgaggtatagaagagactccttg |
437 |
Q |
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| T |
31219274 |
cgttgtgatgcaggaagtatataacattaaggtatagaagacactccttg |
31219225 |
T |
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