View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_18 (Length: 446)
Name: NF1579_low_18
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Original strand, 32942642 - 32943049
Alignment:
| Q |
19 |
ttactacaatacaacagctagctatattttctcaaatttcatttgtttaatcaaaagattttactgaagaaaactagggttacatacatacctcaataaa |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32942642 |
ttactacaatacaacagct----atattttctcaaatttcatttgtttaatcaaaagattttactgaagaaaactagggttacatacatacctcaagaaa |
32942737 |
T |
|
| Q |
119 |
gtctttgtgtaaactatccgggaaccaaagttttttataagcagcaacagataaaagtgctttaagtcctttaacagaattaggtaacaaaagctcggaa |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32942738 |
gtctttgtgtaaacgatccgggaaccaaagttttttataagcagcaacagataaaagtgctttaagtcctttaacagaattaggtaacaaaagctcagaa |
32942837 |
T |
|
| Q |
219 |
gaagaagaaaatccaagttcttgcaatgaactcacactgatagaatcagtcatagccaaaatggatccagatataaccaaagcttgaaccaaatcaggat |
318 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32942838 |
gaagaagaaaatccaagttcttgcaatgaactaacactgatagaatcagtcatagccaaaatggatccagatataaccaaagcttgaaccaaatcaggat |
32942937 |
T |
|
| Q |
319 |
acatctcagccattttaaaagccaccattccaccgtagctaaaaccaacaacaatacatttttcaacaccaagtttccttaaagcaatggccaaacactc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32942938 |
acatctcagccattttaaaagccaccattccaccgtagctaaaaccaacaacaatacatttttcaacaccaagtttccttaaagcaatggccaaacactc |
32943037 |
T |
|
| Q |
419 |
tgcttgaaacct |
430 |
Q |
| |
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|||||||||||| |
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| T |
32943038 |
tgcttgaaacct |
32943049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 427
Target Start/End: Complemental strand, 7768606 - 7768449
Alignment:
| Q |
270 |
atagccaaaatggatccagatataaccaaagcttgaaccaaatcaggatacatctcagccattttaaaagccaccattccaccgtagctaaaaccaacaa |
369 |
Q |
| |
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|||||||||| || |||| || ||||| | ||||||||| |||| ||| | ||||||||||||||| |||||||||||||| || ||||| ||||| | |
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| T |
7768606 |
atagccaaaacagagccagttacaaccacaccttgaaccagatcactataaagctcagccattttaaacgccaccattccaccataactaaatccaacta |
7768507 |
T |
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| Q |
370 |
caatacatttttcaacaccaagtttccttaaagcaatggccaaacactctgcttgaaa |
427 |
Q |
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|| |||||| || || ||||||||| |||| | | |||||||||||||||||||| |
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| T |
7768506 |
aaacacatttctccaccccaagtttctttaacccctttgccaaacactctgcttgaaa |
7768449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 7737724 - 7737624
Alignment:
| Q |
300 |
gcttgaaccaaatcaggatacatctcagccattttaaaagccaccattccaccgtagctaaaaccaacaacaatacatttttcaacaccaagtttcctta |
399 |
Q |
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|||| |||||| ||| ||||||||||||||||||||| |||||||||||||| || || || ||||| |||| |||||| || || || |||||| ||| |
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| T |
7737724 |
gcttcaaccaactcactatacatctcagccattttaaacgccaccattccaccataactgaatccaaccacaacacatttctccaccccgagtttcttta |
7737625 |
T |
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| Q |
400 |
a |
400 |
Q |
| |
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| |
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|
| T |
7737624 |
a |
7737624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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