View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1579_low_20 (Length: 435)

Name: NF1579_low_20
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1579_low_20
NF1579_low_20
[»] chr4 (2 HSPs)
chr4 (1-416)||(52364427-52364842)
chr4 (1-418)||(42492344-42492761)
[»] chr5 (3 HSPs)
chr5 (1-418)||(9935417-9935834)
chr5 (1-418)||(6696451-6696865)
chr5 (307-396)||(5665710-5665800)
[»] chr1 (4 HSPs)
chr1 (1-418)||(39345648-39346065)
chr1 (307-417)||(22908135-22908246)
chr1 (308-418)||(6911207-6911316)
chr1 (307-412)||(21529753-21529859)
[»] chr7 (6 HSPs)
chr7 (205-344)||(9972979-9973118)
chr7 (307-410)||(13323823-13323927)
chr7 (382-418)||(9972950-9972986)
chr7 (308-417)||(33378556-33378664)
chr7 (308-416)||(27214096-27214203)
chr7 (308-416)||(48160814-48160921)
[»] chr2 (3 HSPs)
chr2 (2-196)||(21935843-21936027)
chr2 (287-395)||(21935703-21935811)
chr2 (232-270)||(21935804-21935842)
[»] chr8 (3 HSPs)
chr8 (307-417)||(10644178-10644289)
chr8 (307-412)||(17506909-17507015)
chr8 (308-418)||(32661175-32661284)
[»] chr6 (1 HSPs)
chr6 (307-412)||(21506151-21506257)
[»] scaffold0697 (1 HSPs)
scaffold0697 (307-412)||(710-815)
[»] chr3 (1 HSPs)
chr3 (307-371)||(27426914-27426979)


Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 52364842 - 52364427
Alignment:
Q  1 ataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52364842 ataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcggattgacatcatttacatg 52364743  T
Q  100 tggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacggg 199  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52364742 tggttacttgctgattgatttccttgaatgcttcttt-gtagaattttctttttccagttcatgtttaattagttggttttctatttcttattaaacggg 52364644  T
Q  200 taaaattggaattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaaca 299  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52364643 taaaattggaattacatcattcattttcaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaagaaca 52364544  T
Q  300 aaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatcc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52364543 aaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagataattcctgggaataaattgtgtatcc 52364444  T
Q  400 atgaaacaaacgcaccc 416  Q
    |||||||||||||||||    
T  52364443 atgaaacaaacgcaccc 52364427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 42492344 - 42492761
Alignment:
Q  1 ataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42492344 ataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcgtattgacatcatttacatg 42492443  T
Q  100 tggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacggg 199  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  42492444 tggttacttgctgattgatttccttgaatgtttcttt-gtagaattttcttattccagttcatgtttaattagttggttttctatttcttattaaacggg 42492542  T
Q  200 taaaattggaattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaaca 299  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42492543 taaaattggaattacatcattcattcccaggaacaagttttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaaca 42492642  T
Q  300 aaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatcc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  42492643 aaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagataattcctgagaataaattgtgtatcc 42492742  T
Q  400 atgaaacaaacgcacccta 418  Q
    |||||||||||||||||||    
T  42492743 atgaaacaaacgcacccta 42492761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 9935834 - 9935417
Alignment:
Q  1 ataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9935834 ataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcgtattgacatcatttacatg 9935735  T
Q  100 tggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacggg 199  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  9935734 tggttacttgctgattgatttccttgaatgtttcttt-gtagaattttcttattccagttcatgtttaattagttggttttctatttcttattaaacggg 9935636  T
Q  200 taaaattggaattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaaca 299  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9935635 taaaattggaattacatcattcattcccaggaacaagttttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaaca 9935536  T
Q  300 aaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatcc 399  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  9935535 aaactatttaaccaaacacttttttcatattttcctaagaataaaaatcacacctttatatttcagggaaagataattcctaggaataaattgtgtatcc 9935436  T
Q  400 atgaaacaaacgcacccta 418  Q
    || ||||||||||||||||    
T  9935435 ataaaacaaacgcacccta 9935417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 6696451 - 6696865
Alignment:
Q  1 ataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatg 99  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6696451 ataagttgttttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcgtattgacatcatttacatg 6696550  T
Q  100 tggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacggg 199  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  6696551 tggttacttgctgattgatttccttgaatgtttcttt-gtagaattttcttattccagttcatgtttaattagttggttttctatttcttattaaacggg 6696649  T
Q  200 taaaattggaattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaaca 299  Q
    ||   |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6696650 ta---ttggaattacatcattcattcccaggaacaagttttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaaca 6696746  T
Q  300 aaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatcc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  6696747 aaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagataattcctaggaataaattgtgtatcc 6696846  T
Q  400 atgaaacaaacgcacccta 418  Q
    |||||||||||||||||||    
T  6696847 atgaaacaaacgcacccta 6696865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 396
Target Start/End: Complemental strand, 5665800 - 5665710
Alignment:
Q  307 ttaaccaaacacttttttca-tattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgta 396  Q
    |||||||||||||||||||  ||||||||| |||||||||||  | |||||| ||||| ||| ||| | ||||||||||||||||| ||||    
T  5665800 ttaaccaaacacttttttctgtattttcctgggaataaaaatttcccctttacattcctgggtaagttaattcctgggaataaattttgta 5665710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 39345648 - 39346065
Alignment:
Q  1 ataagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcg-attgacatcatttacatg 99  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  39345648 ataagttgctttattgtctacatggactagactccattttcgtaaagcatatgcataaaaataacaatgcagaaaggatcggattgacatcatttacatg 39345747  T
Q  100 tggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaaacggg 199  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39345748 tggttacttgctgattgatttccttgaatgcttcttt-gtagaattttctttttccagttcatgtttaattagttggttttctatttcttattaaacggg 39345846  T
Q  200 taaaattggaattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaaca 299  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39345847 taaaattggaattacatcattcattttcaggaacaaattttgcaatacaaacacatttcaattattctcagtttcttttttaataaaattcccaggaaca 39345946  T
Q  300 aaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatcc 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||    
T  39345947 aaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagaaaaagataattcctgggaataaattgtgtatcc 39346046  T
Q  400 atgaaacaaacgcacccta 418  Q
    |||||||||||||||||||    
T  39346047 atgaaacaaacgcacccta 39346065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 417
Target Start/End: Original strand, 22908135 - 22908246
Alignment:
Q  307 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 405  Q
    |||| |||||||||||||| |||||||||| ||||||||| |   ||||| | |||||  |||||| |||| |||||||||||||| |||| || | |||    
T  22908135 ttaatcaaacacttttttctatattttcctgggaataaaattttaaccttcacattcctaggaaagttgatacctgggaataaattttgtaaccctcaaa 22908234  T
Q  406 caaacgcaccct 417  Q
    ||||||| ||||    
T  22908235 caaacgccccct 22908246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 6911316 - 6911207
Alignment:
Q  308 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 407  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  6911316 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca 6911218  T
Q  408 aacgcacccta 418  Q
    ||| |||||||    
T  6911217 aacacacccta 6911207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 412
Target Start/End: Complemental strand, 21529859 - 21529753
Alignment:
Q  307 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 405  Q
    ||||||||||||||||||| ||||||| || ||||||||| |   ||||| | ||||| ||||||| |||| |||| ||||| ||| |||| || | |||    
T  21529859 ttaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgagaatagattttgtaaccctcaaa 21529760  T
Q  406 caaacgc 412  Q
    |||||||    
T  21529759 caaacgc 21529753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 205 - 344
Target Start/End: Complemental strand, 9973118 - 9972979
Alignment:
Q  205 ttggaattacatcattcatttccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaact 304  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9973118 ttggaattacatcattcatctccaggaacaaattttgcaatacaaacacatttcaattattcccagtttcttttttaataaaattcccaggaacaaaact 9973019  T
Q  305 atttaaccaaacacttttttcatattttcctaggaataaa 344  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  9973018 atttaaccaaacacttttttcatatttttctaggaataaa 9972979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 410
Target Start/End: Complemental strand, 13323927 - 13323823
Alignment:
Q  307 ttaaccaaacacttttttca-tattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 405  Q
    |||||||||||||||||||  |||||||||||||||||||||  | |||||| ||||| ||| ||| | ||||||||||||||||| |||| || | |||    
T  13323927 ttaaccaaacacttttttctgtattttcctaggaataaaaatttcccctttacattcctgggtaagttaattcctgggaataaattttgtaaccctcaaa 13323828  T
Q  406 caaac 410  Q
    |||||    
T  13323827 caaac 13323823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 9972986 - 9972950
Alignment:
Q  382 ggaataaattgtgtatccatgaaacaaacgcacccta 418  Q
    |||||||||||||||||||||||||||||||||||||    
T  9972986 ggaataaattgtgtatccatgaaacaaacgcacccta 9972950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 417
Target Start/End: Complemental strand, 33378664 - 33378556
Alignment:
Q  308 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 407  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  33378664 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca 33378566  T
Q  408 aacgcaccct 417  Q
    ||| ||||||    
T  33378565 aacacaccct 33378556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 416
Target Start/End: Original strand, 27214096 - 27214203
Alignment:
Q  308 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 407  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  27214096 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttggtaaacttgaaaca 27214194  T
Q  408 aacgcaccc 416  Q
    ||| |||||    
T  27214195 aacacaccc 27214203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 416
Target Start/End: Original strand, 48160814 - 48160921
Alignment:
Q  308 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 407  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  48160814 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttagtaaacttgaaaca 48160912  T
Q  408 aacgcaccc 416  Q
    ||| |||||    
T  48160913 aacacaccc 48160921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 21936027 - 21935843
Alignment:
Q  2 taagttgctttattgtctacatggactaggctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatc-------gattgacatcattt 94  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  21936027 taagttgctttattgtctacatgaactacgctccattttcgtaaagcatatgcataaaaataataatgcagaaaggatcggattcggattgacatcattt 21935928  T
Q  95 acatgtggttacttgctgattgatttccttgaatgtttctttagtagaattttcttttcccagttcatgtttaattagttggttttctatttcttattaa 194  Q
    |||||||||||||||||||||||||||  |||||||||||              |||||| | |||||||||||||||||||||||||||||||||||||    
T  21935927 acatgtggttacttgctgattgatttc--tgaatgtttct--------------ttttccga-ttcatgtttaattagttggttttctatttcttattaa 21935845  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 287 - 395
Target Start/End: Complemental strand, 21935811 - 21935703
Alignment:
Q  287 attcccaggaacaaaactatttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaat 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  21935811 attcccaggaacaaaactatttaaccaaacacttttttcatatttttctagaaataaaaatcacacctttatatttcagggaaagataattcctgagaat 21935712  T
Q  387 aaattgtgt 395  Q
    |||||||||    
T  21935711 aaattgtgt 21935703  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 21935842 - 21935804
Alignment:
Q  232 acaaattttgcaatacaaacacatttcaattattcccag 270  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  21935842 acaaattttgcaatccaaacacatttcaattattcccag 21935804  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 417
Target Start/End: Original strand, 10644178 - 10644289
Alignment:
Q  307 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 405  Q
    ||||||||||||||||||| |||||||||| ||||||||| |   ||||| ||||||| || |||| |||| |||||||||| ||| |||| || | |||    
T  10644178 ttaaccaaacacttttttctatattttcctgggaataaaattttaaccttcatattcctggaaaagttgatacctgggaatagattttgtaaccctcaaa 10644277  T
Q  406 caaacgcaccct 417  Q
    ||||||| ||||    
T  10644278 caaacgccccct 10644289  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 412
Target Start/End: Complemental strand, 17507015 - 17506909
Alignment:
Q  307 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 405  Q
    ||||||||||||||||||| ||||||| || ||||||||| |   ||||| | ||||| ||||||| |||| |||||||||| ||| |||| || | |||    
T  17507015 ttaaccaaacacttttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgggaatagattttgtaaccctcaaa 17506916  T
Q  406 caaacgc 412  Q
    |||||||    
T  17506915 caaacgc 17506909  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 418
Target Start/End: Original strand, 32661175 - 32661284
Alignment:
Q  308 taaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaaca 407  Q
    ||||||||||  |||||||||  ||||| ||||||||| || || |||||||||||| |||| | | |||||| ||||||||||  |||  | |||||||    
T  32661175 taaccaaacatatttttcataaattccttggaataaaattcccatctttatattccaaggaatg-ttattcctaggaataaatttagtaaacttgaaaca 32661273  T
Q  408 aacgcacccta 418  Q
    ||| |||||||    
T  32661274 aacacacccta 32661284  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 21506151 - 21506257
Alignment:
Q  307 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaa 405  Q
    ||||||||||||||||||| |||||||||||||||||||| |   ||||| | ||||| || |||| |||| |||||||||  ||| |||| || | |||    
T  21506151 ttaaccaaacacttttttctatattttcctaggaataaaattttaaccttcacattcctggaaaagttgatacctgggaatcgattttgtaaccctcaaa 21506250  T
Q  406 caaacgc 412  Q
    |||||||    
T  21506251 caaacgc 21506257  T

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Target: scaffold0697 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 412
Target Start/End: Complemental strand, 815 - 710
Alignment:
Q  307 ttaaccaaacacttttttcatattttcctaggaataaaaatcacacctttatattccagggaaagatgattcctgggaataaattgtgtatccatgaaac 406  Q
    |||||||||||||||||  ||||||| || ||||||||| |   ||||| | ||||| ||||||| |||| |||| ||||| ||| |||| || | ||||    
T  815 ttaaccaaacactttttctatatttttctgggaataaaattttaaccttcacattcctgggaaagttgatacctgagaatagattttgtaaccctcaaac 716  T
Q  407 aaacgc 412  Q
    ||||||    
T  715 aaacgc 710  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 27426914 - 27426979
Alignment:
Q  307 ttaaccaaacacttttttc-atattttcctaggaataaaaatcacacctttatattccagggaaag 371  Q
    ||||||||||||||||||| |||||||||| ||||||||| |   ||||| | |||||||||||||    
T  27426914 ttaaccaaacacttttttctatattttcctcggaataaaattttaaccttcacattccagggaaag 27426979  T

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