View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1579_low_21 (Length: 427)

Name: NF1579_low_21
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1579_low_21
NF1579_low_21
[»] chr6 (13 HSPs)
chr6 (18-424)||(28141311-28141717)
chr6 (162-304)||(29827838-29827980)
chr6 (118-303)||(28295894-28296076)
chr6 (118-303)||(28515997-28516179)
chr6 (176-294)||(28096600-28096718)
chr6 (118-302)||(28236351-28236532)
chr6 (159-288)||(28151090-28151219)
chr6 (157-205)||(2186717-2186765)
chr6 (114-249)||(28327369-28327501)
chr6 (114-249)||(28505005-28505137)
chr6 (118-303)||(28244723-28244905)
chr6 (168-214)||(26341735-26341781)
chr6 (202-304)||(28153730-28153832)
[»] chr5 (1 HSPs)
chr5 (159-425)||(16692985-16693252)
[»] scaffold0019 (1 HSPs)
scaffold0019 (118-303)||(56457-56639)
[»] chr2 (1 HSPs)
chr2 (176-288)||(3281582-3281694)
[»] scaffold0038 (2 HSPs)
scaffold0038 (118-302)||(36513-36694)
scaffold0038 (118-303)||(44885-45067)


Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 28141311 - 28141717
Alignment:
Q  18 ttctcttataaatgtaaatttctgtacataaatgtgttgaaattgtaccatacacgtgtatttcgtttaacttgtacgttgtatttaaaggggaccagta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28141311 ttctcttataaatgtaaatttctgtacataaatgtgttgaaattgtaccatacacgtgtatttcgtttaacttgtacgttgtatttaaaggggaccagta 28141410  T
Q  118 aaattgaaattatatatatggaatccccgttgtctaaggaagaagaagtggtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaacttt 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28141411 aaattgaaattatatatatggaatccccattgtctaaggaagaagaagtggtagaatggaaaggagatgaattaaagaagatggaaaacctcaaaacttt 28141510  T
Q  218 tattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaataatttaagagtactggaatggcgtagttatccttcacaagattcaccatca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28141511 tattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaataatttaagagtactggaatggcgtagttatccttcacaagattcaccatca 28141610  T
Q  318 attttttggcagaagaaactttccatatgcaagttacgtgaaagctgctttacatcatttgaattgcatgattcaataaaggtatgtgttatgaattcat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28141611 attttttggcagaagaaactttccatatgcaagttacgtgaaagctgctttacatcatttgaattgcatgattcaataaaggtatgtgttatgaattcat 28141710  T
Q  418 ttctctc 424  Q
    |||||||    
T  28141711 ttctctc 28141717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 304
Target Start/End: Original strand, 29827838 - 29827980
Alignment:
Q  162 gaagtggtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaacttttattattaaaagaggtcgcttttccaaaggtcttgagcatcttc 261  Q
    |||| |||||||| ||||||||||||||| ||||||||| |||||||||||||  |||||||  |||  ||||||||||| | || || ||| || ||||    
T  29827838 gaagaggtagaatggaaaggagatgaattgaagaagatgaaaaacctcaaaacacttattatagaaaatggtcgcttttctagagctcctgaacaacttc 29827937  T
Q  262 caaataatttaagagtactggaatggcgtagttatccttcaca 304  Q
    |||| | |||||||||  ||||||||| | | |||||||||||    
T  29827938 caaacagtttaagagtcttggaatggcctggatatccttcaca 29827980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 303
Target Start/End: Complemental strand, 28296076 - 28295894
Alignment:
Q  118 aaattgaaattatatatatggaatccccgttgtctaaggaagaagaagtggtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaacttt 217  Q
    ||||||||||||||||| |||||| |||||| ||| ||||||| |   || |||||| ||| ||||||||  | ||||||||| |||||||||||||  |    
T  28296076 aaattgaaattatatatttggaattcccgttatctgaggaagagg---tgatagaatggaagggagatgagctcaagaagatgcaaaacctcaaaacact 28295980  T
Q  218 tattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaataatttaagagtactggaatggcgtagttatccttcac 303  Q
    |||| |||| |  ||| ||||||||||||||| | |  ||||||| || | ||| |||||| ||||||||| ||  ||||||||||    
T  28295979 tattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgagagtattggaatggcctaaatatccttcac 28295894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 303
Target Start/End: Original strand, 28515997 - 28516179
Alignment:
Q  118 aaattgaaattatatatatggaatccccgttgtctaaggaagaagaagtggtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaacttt 217  Q
    ||||||||||||||||| |||||| |||||| ||| ||||||| |   || |||||| ||| ||||||||  | ||||||||| |||||||||||||  |    
T  28515997 aaattgaaattatatatttggaattcccgttatctgaggaagagg---tgatagaatggaagggagatgagctcaagaagatgcaaaacctcaaaacact 28516093  T
Q  218 tattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaataatttaagagtactggaatggcgtagttatccttcac 303  Q
    |||| |||| |  ||| ||||||||||||||| | |  ||||||| || | ||| |||||| ||||||||| ||  ||||||||||    
T  28516094 tattgttaagaatggtagcttttccaaaggtcctaaatatcttcctaacagtttgagagtattggaatggcctaaatatccttcac 28516179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 294
Target Start/End: Complemental strand, 28096718 - 28096600
Alignment:
Q  176 gaaaggagatgaattaaagaagatggaaaacctcaaaacttttattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaataatttaaga 275  Q
    ||||||||||||||||||||||||| ||||||| |||||  ||||  ||||||   ||  |||| |||||  || ||  ||||||||| |||||||||||    
T  28096718 gaaaggagatgaattaaagaagatgaaaaaccttaaaacacttatcgttaaaactagtttctttcccaaacctcatgtacatcttccagataatttaaga 28096619  T
Q  276 gtactggaatggcgtagtt 294  Q
    ||||||||||||| |||||    
T  28096618 gtactggaatggcatagtt 28096600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 302
Target Start/End: Original strand, 28236351 - 28236532
Alignment:
Q  118 aaattgaaattatatatatggaatccccgttgtctaaggaagaagaagtggtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaacttt 217  Q
    ||||||||||||||||| |||||| |||||  ||| ||||||| |   || |||| | ||| ||||||||| | ||||||||| |||||||||||||  |    
T  28236351 aaattgaaattatatatttggaattcccgtcatctgaggaagagg---tgatagattggaagggagatgaactcaagaagatgcaaaacctcaaaacact 28236447  T
Q  218 tattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaataatttaagagtactggaatggcgtagttatccttca 302  Q
    |||| |||| |  |||  |||||||||||||| | |  ||||||| |||| ||| |||||| ||||||||| ||  |||||||||    
T  28236448 tattgttaagaatggtaccttttccaaaggtcctaattatcttcctaatagtttgagagtattggaatggcctaaatatccttca 28236532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 288
Target Start/End: Original strand, 28151090 - 28151219
Alignment:
Q  159 gaagaagtggtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaacttttattattaaaagaggtcgcttttccaaaggtcttgagcatc 258  Q
    |||||| | ||||||| ||||||||||||||| ||||||||| |||||||||||||  || || ||||||   ||  ||||| |||   || ||  ||||    
T  28151090 gaagaaatagtagaatggaaaggagatgaattcaagaagatgaaaaacctcaaaacacttgttgttaaaactagtttctttttcaaccctcatgtacatc 28151189  T
Q  259 ttccaaataatttaagagtactggaatggc 288  Q
    ||||||||| |||||||||| |||||||||    
T  28151190 ttccaaatagtttaagagtattggaatggc 28151219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 2186717 - 2186765
Alignment:
Q  157 aagaagaagtggtagaatagaaaggagatgaattaaagaagatggaaaa 205  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  2186717 aagaagaagaggtagaatggaaaggagatgaattgaagaagatggaaaa 2186765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 249
Target Start/End: Original strand, 28327369 - 28327501
Alignment:
Q  114 agtaaaattgaaattatatatatggaatccccgttgtctaaggaagaagaagtggtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaa 213  Q
    ||||||||||||||||||||| |||||| |||||  ||| || || |||  |||||||| | ||| ||||||||| | ||||||||| ||||||| ||||    
T  28327369 agtaaaattgaaattatatatttggaattcccgtcatctgagcaa-aag--gtggtagattggaagggagatgaactcaagaagatgcaaaaccttaaaa 28327465  T
Q  214 cttttattattaaaagaggtcgcttttccaaaggtc 249  Q
    |  ||||| |||| |  ||| |||||||||||||||    
T  28327466 cacttattgttaagaatggtagcttttccaaaggtc 28327501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 249
Target Start/End: Original strand, 28505005 - 28505137
Alignment:
Q  114 agtaaaattgaaattatatatatggaatccccgttgtctaaggaagaagaagtggtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaa 213  Q
    ||||||||||||||||||||| |||||| |||||  ||| || || |||  |||||||| | ||| ||||||||| | ||||||||| ||||||| ||||    
T  28505005 agtaaaattgaaattatatatttggaattcccgtcatctgagcaa-aag--gtggtagattggaagggagatgaactcaagaagatgcaaaaccttaaaa 28505101  T
Q  214 cttttattattaaaagaggtcgcttttccaaaggtc 249  Q
    |  ||||| |||| |  ||| |||||||||||||||    
T  28505102 cacttattgttaagaatggtagcttttccaaaggtc 28505137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 303
Target Start/End: Original strand, 28244723 - 28244905
Alignment:
Q  118 aaattgaaattatatatatggaatccccgttgtctaaggaagaagaagtggtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaacttt 217  Q
    ||||||||||||||||| |||||| |||||  ||| ||||||| |   ||||||| | | | ||||||||| | |||||||||||||||||||||||  |    
T  28244723 aaattgaaattatatatttggaattcccgtcatctgaggaagagg---tggtagattgggagggagatgaactgaagaagatggaaaacctcaaaacact 28244819  T
Q  218 tattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaataatttaagagtactggaatggcgtagttatccttcac 303  Q
    |||| |||| |  |||  ||||||||| ||||   |  |||||||||| | | | |||||| ||||||||| ||  ||||||||||    
T  28244820 tattgttaagaatggtaccttttccaatggtccaaaatatcttccaaacagtctgagagtattggaatggcctaaatatccttcac 28244905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 26341781 - 26341735
Alignment:
Q  168 gtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaac 214  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  26341781 gtagaatggaaaggagatgaattcaagaagatgaaaaacctcaaaac 26341735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 304
Target Start/End: Original strand, 28153730 - 28153832
Alignment:
Q  202 aaaacctcaaaacttttattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaataatttaagagtactggaatggcgtagttatccttc 301  Q
    |||||||||||||||| || |||||||| ||   |||| |||||| ||  |  ||||||||||||||||| ||| | || ||||||| ||| ||||||||    
T  28153730 aaaacctcaaaactttgatcattaaaagtggcttctttcccaaagatcccggacatcttccaaataatttgagatttctagaatggcatagatatccttc 28153829  T
Q  302 aca 304  Q
    |||    
T  28153830 aca 28153832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 159 - 425
Target Start/End: Original strand, 16692985 - 16693252
Alignment:
Q  159 gaagaagtggtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaacttttattattaaaagaggtcgcttttccaaaggtcttgagcatc 258  Q
    ||||||||||| |||| |||||| ||||| || |||||||||  ||||||||||||  |||||||||| |  |||| |||||||||||| |   | ||||    
T  16692985 gaagaagtggttgaatggaaaggtgatgagttcaagaagatgataaacctcaaaacacttattattaagaatggtcacttttccaaaggaccaaaacatc 16693084  T
Q  259 ttccaaataatttaagagtactggaatggcgtagttatccttcacaagattcaccatcaattttttggcagaagaaactttccatatgcaagttacgtga 358  Q
    ||||||||| ||||||||| || ||||||| ||| ||||||||||    |  ||| || |  ||||  || |||||||||||||||||||||||| ||||    
T  16693085 ttccaaatagtttaagagtgcttgaatggcatagatatccttcactgagtataccttccaacttttatcaaaagaaactttccatatgcaagttaggtga 16693184  T
Q  359 aagctgctttacatcatttgaattgcatgattcaataaaggtatgtgt-tatgaattcatttctctcg 425  Q
    ||| | ||||||  ||||||| |||||||  ||| | |||||||||||  |||| |||||||||||||    
T  16693185 aagtttctttaccacatttgagttgcatggatcattgaaggtatgtgtaaatgagttcatttctctcg 16693252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 303
Target Start/End: Complemental strand, 56639 - 56457
Alignment:
Q  118 aaattgaaattatatatatggaatccccgttgtctaaggaagaagaagtggtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaacttt 217  Q
    ||||||||||||||||| |||||| |||||| | | || |||| |   ||||||| | ||| ||||||||| | ||||||||| |||||||||||||  |    
T  56639 aaattgaaattatatatttggaattcccgttatgtgagaaagagg---tggtagattggaagggagatgaactcaagaagatgcaaaacctcaaaacact 56543  T
Q  218 tattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaataatttaagagtactggaatggcgtagttatccttcac 303  Q
    |||| |||| |  ||| ||||||||||||||| | | |||||||| || | ||| |||||| ||||||||||||  ||||||||||    
T  56542 tattgttaagaatggtagcttttccaaaggtcctaaacatcttcctaacagtttgagagtattggaatggcgtaaatatccttcac 56457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 3281582 - 3281694
Alignment:
Q  176 gaaaggagatgaattaaagaagatggaaaacctcaaaacttttattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaataatttaaga 275  Q
    ||||||||||||||| ||||||||| |||||||||||||  ||||| ||||||   ||  ||||||||||  |||||  |||||||| |||| ||||| |    
T  3281582 gaaaggagatgaattcaagaagatgaaaaacctcaaaacacttattgttaaaactagttccttttccaaacctcttgtacatcttcctaatagtttaaaa 3281681  T
Q  276 gtactggaatggc 288  Q
    |||||||||||||    
T  3281682 gtactggaatggc 3281694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 302
Target Start/End: Original strand, 36513 - 36694
Alignment:
Q  118 aaattgaaattatatatatggaatccccgttgtctaaggaagaagaagtggtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaacttt 217  Q
    ||||||||||||||||| |||||| |||||  ||| ||||||| |   || |||| | ||| ||||||||| | ||||||||| |||||||||||||  |    
T  36513 aaattgaaattatatatttggaattcccgtcatctgaggaagagg---tgatagattggaagggagatgaactcaagaagatgcaaaacctcaaaacact 36609  T
Q  218 tattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaataatttaagagtactggaatggcgtagttatccttca 302  Q
    |||| |||| |  |||  |||||||||||||| | |  ||||||| |||| ||| |||||| ||||||||| ||  |||||||||    
T  36610 tattgttaagaatggtaccttttccaaaggtcctaattatcttcctaatagtttgagagtattggaatggcctaaatatccttca 36694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 303
Target Start/End: Original strand, 44885 - 45067
Alignment:
Q  118 aaattgaaattatatatatggaatccccgttgtctaaggaagaagaagtggtagaatagaaaggagatgaattaaagaagatggaaaacctcaaaacttt 217  Q
    ||||||||||||||||| |||||| |||||  ||| ||||||| |   ||||||| | | | ||||||||| | |||||||||||||||||||||||  |    
T  44885 aaattgaaattatatatttggaattcccgtcatctgaggaagagg---tggtagattgggagggagatgaactgaagaagatggaaaacctcaaaacact 44981  T
Q  218 tattattaaaagaggtcgcttttccaaaggtcttgagcatcttccaaataatttaagagtactggaatggcgtagttatccttcac 303  Q
    |||| |||| |  |||  ||||||||| ||||   |  |||||||||| | | | |||||| ||||||||| ||  ||||||||||    
T  44982 tattgttaagaatggtaccttttccaatggtccaaaatatcttccaaacagtctgagagtattggaatggcctaaatatccttcac 45067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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