View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_22 (Length: 407)
Name: NF1579_low_22
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 53090350 - 53090734
Alignment:
| Q |
1 |
tacaagcaagcacatgacacactctgcaaaattgatgacaatctgcacttgtagtttgtaccctgtttcnnnnnnnnntcataggataggagaatcttat |
100 |
Q |
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| T |
53090350 |
tacaagcaagcacatgacacactctgcaaa-ttgatgacaatctgcacttgtagtttgtaccctgtttcaaaaaaaaaacataggataggagaatcttat |
53090448 |
T |
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| Q |
101 |
tgatggatggaccttcaattaaaatgtccaagaattccttattggtgatttaaataattcaagtaattaaccattttgatattctaataaaattgagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53090449 |
tgatggatggaccttcaattaaaatgtccaagaattccttattggtgatttaaataattcaagtaattaaccattttgatattctaataaaattgagtga |
53090548 |
T |
|
| Q |
201 |
tgtgatggtgtatagaacctggtgtttgagtttggttgcagttgcatagagctctccagctaaaactttatcaccgaataatgtaacagcctctttgacg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53090549 |
tgtgatggtgtatagaacctggtgtttgagtttggttgcagttgcatagagctctccagctaaaactttatcaccgaataatgtaacagcctctttgacg |
53090648 |
T |
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| Q |
301 |
gacctgaatggcgcccttgtgtctatctctgtatttctggtgagcagcatcacaccctctttattcttattcatctttgtgttaga |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53090649 |
gacctgaatggcgcccttgtgtctatctctgtatttctggtgagcagcatcacaccctctttattcttattcatctttgtgttaga |
53090734 |
T |
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