View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1579_low_23 (Length: 400)
Name: NF1579_low_23
Description: NF1579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1579_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 33611509 - 33611874
Alignment:
| Q |
19 |
accttaaaattgaaagatgttttaagggtaacattcgatannnnnnnggtctctttttatttatcattttaagtaccgattcttttggttaatactgtgg |
118 |
Q |
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| T |
33611509 |
accttaaaattgtaagatgttttaagggtaacatttggaatttttttggtctctttttatttatcattttaagtacccatttttttggttaatactgtgg |
33611608 |
T |
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| Q |
119 |
tctagtgttttttaatctacatcataactaataagggtatttttgtcaatagaaagattttatcaagtcaagaattaactttacattacacttaaaacga |
218 |
Q |
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| T |
33611609 |
tctagtgtttcttaatctacatcataactaataagggtatttttgtcaataatttttttttataaagtcaagaattaactttacattacacttaaaacga |
33611708 |
T |
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| Q |
219 |
gacaaagagattataacaagtcaatgcaaatcatatgatatttagatctaagactaatgttttcttttcaagatttagatgcaagactaatgttttcttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33611709 |
gacaaagagattataacaagtcaatgcaaatcatatgatatttagatctaagactaatgttttcttttcaagatttagatgcaagactaatgttttcttt |
33611808 |
T |
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| Q |
319 |
aaatattcatgtgattatgttgaaccaagtttcctagaggatgatgaataatccacaccaaaaaat |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33611809 |
aaatattcatgtgattatgttgaaccaagtttcctagatgatgatgaataatccacaccaaaaaat |
33611874 |
T |
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